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  5. Nbi_g04805

Nbi_g04805 (UBP1B)


Aliases : UBP1B

Description : stress granule assembly factor *(UBP1) & original description: none


Gene families : OG0002014 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002014_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04805

Target Alias Description ECC score Gene Family Method Actions
Azfi_s0743.g084783 UBP1B stress granule assembly factor *(UBP1) & original... 0.02 OrthoFinder output from all 47 species
LOC_Os07g42380.1 LOC_Os07g42380 mRNA-binding regulatory factor (UBP1) 0.02 OrthoFinder output from all 47 species
Msp_g16815 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0123.g021496 UBP1B stress granule assembly factor *(UBP1) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005849 mRNA cleavage factor complex IEP HCCA
BP GO:0006378 mRNA polyadenylation IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006810 transport IEP HCCA
BP GO:0006812 monoatomic cation transport IEP HCCA
BP GO:0006813 potassium ion transport IEP HCCA
BP GO:0008150 biological_process IEP HCCA
MF GO:0008324 monoatomic cation transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015079 potassium ion transmembrane transporter activity IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
MF GO:0022890 inorganic cation transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0031123 RNA 3'-end processing IEP HCCA
BP GO:0031124 mRNA 3'-end processing IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0043631 RNA polyadenylation IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
BP GO:0051179 localization IEP HCCA
BP GO:0051234 establishment of localization IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
BP GO:0055085 transmembrane transport IEP HCCA
BP GO:0071805 potassium ion transmembrane transport IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 187 257
IPR000504 RRM_dom 322 387
IPR000504 RRM_dom 102 167
No external refs found!