Nbi_g04470 (TRZ3)

Aliases : TRZ3

Description : EC_3.1 hydrolase acting on ester bond & original description: none

Gene families : OG0002827 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002827_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04470

Target	Alias	Description	ECC score	Gene Family Method
AT1G52160	TRZ3	tRNAse Z3	0.04	OrthoFinder output from all 47 species
AT3G16260	TRZ4	tRNAse Z4	0.02	OrthoFinder output from all 47 species
Adi_g014251	TRZ4	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species
Adi_g016817	TRZ4	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Cba_g37862	TRZ4	EC_3.1 hydrolase acting on ester bond & original...	0.04	OrthoFinder output from all 47 species
Dde_g10517	TRZ4	EC_3.1 hydrolase acting on ester bond & original...	0.05	OrthoFinder output from all 47 species
MA_10429994g0010	TRZ4	endoribonuclease (RNase Z)	0.02	OrthoFinder output from all 47 species
MA_15442g0010	TRZ3	endoribonuclease (RNase Z)	0.04	OrthoFinder output from all 47 species
Msp_g15294	TRZ3	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Msp_g47135	TRZ3	EC_3.1 hydrolase acting on ester bond & original...	0.05	OrthoFinder output from all 47 species
Ppi_g11028	TRZ4	EC_3.1 hydrolase acting on ester bond & original...	0.03	OrthoFinder output from all 47 species
Sam_g11586	No alias	EC_3.1 hydrolase acting on ester bond & original...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	None	Extended
BP	GO:0006399	tRNA metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008033	tRNA processing	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034470	ncRNA processing	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034660	ncRNA metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
MF	GO:0050660	flavin adenine dinucleotide binding	IEP	HCCA
MF	GO:0071949	FAD binding	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR027794	tRNase_Z_dom	738	791

External Links

No external refs found!