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  5. Nbi_g04469

Nbi_g04469


Description : component *(CAP-D2A) of condensin I complex & original description: none


Gene families : OG0004821 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004821_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04469
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00063p00018970 evm_27.TU.AmTr_v1... Cell cycle.mitosis and meiosis.chromatin... 0.18 OrthoFinder output from all 47 species
AT3G57060 No alias binding 0.18 OrthoFinder output from all 47 species
Aev_g21439 No alias component *(CAP-D2A) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Ala_g26011 No alias component *(CAP-D2A) of condensin I complex & original... 0.2 OrthoFinder output from all 47 species
Als_g16422 No alias component *(CAP-D2A) of condensin I complex & original... 0.17 OrthoFinder output from all 47 species
Aop_g66013 No alias component *(CAP-D2A) of condensin I complex & original... 0.29 OrthoFinder output from all 47 species
Aspi01Gene72377.t1 Aspi01Gene72377 component *(CAP-D2A) of condensin I complex & original... 0.23 OrthoFinder output from all 47 species
Ceric.08G005100.1 Ceric.08G005100 component *(CAP-D2A) of condensin I complex & original... 0.25 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021070.118 No alias Cell cycle.mitosis and meiosis.chromatin... 0.09 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021070.119 No alias Cell cycle.mitosis and meiosis.chromatin... 0.06 OrthoFinder output from all 47 species
Cre10.g432500 No alias Cell cycle.mitosis and meiosis.chromatin... 0.05 OrthoFinder output from all 47 species
Dcu_g06519 No alias component *(CAP-D2A) of condensin I complex & original... 0.05 OrthoFinder output from all 47 species
GSVIVT01033598001 No alias Cell cycle.mitosis and meiosis.chromatin... 0.15 OrthoFinder output from all 47 species
Gb_21478 No alias component CAP-D2A of condensin I complex 0.23 OrthoFinder output from all 47 species
LOC_Os07g46540.1 LOC_Os07g46540 component CAP-D2A of condensin I complex 0.18 OrthoFinder output from all 47 species
Len_g59596 No alias component *(CAP-D2A) of condensin I complex & original... 0.1 OrthoFinder output from all 47 species
Lfl_g38611 No alias component *(CAP-D2A) of condensin I complex & original... 0.13 OrthoFinder output from all 47 species
MA_10427588g0010 No alias component CAP-D2A of condensin I complex 0.14 OrthoFinder output from all 47 species
MA_10427588g0020 No alias component CAP-D2A of condensin I complex. serine carboxypeptidase 0.14 OrthoFinder output from all 47 species
Mp3g03650.1 No alias component CAP-D2A of condensin I complex 0.15 OrthoFinder output from all 47 species
Msp_g14231 No alias component *(CAP-D2A) of condensin I complex & original... 0.33 OrthoFinder output from all 47 species
Ppi_g31657 No alias component *(CAP-D2A) of condensin I complex & original... 0.14 OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002898 No alias component *(CAP-D2A) of condensin I complex & original... 0.04 OrthoFinder output from all 47 species
Spa_g41134 No alias component *(CAP-D2A) of condensin I complex & original... 0.17 OrthoFinder output from all 47 species
Spa_g43429 No alias component *(CAP-D2A) of condensin I complex & original... 0.03 OrthoFinder output from all 47 species
Tin_g11231 No alias component *(CAP-D2A) of condensin I complex & original... 0.21 OrthoFinder output from all 47 species
Zm00001e035766_P001 Zm00001e035766 component CAP-D2A of condensin I complex 0.15 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003916 DNA topoisomerase activity IEP HCCA
MF GO:0003918 DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
MF GO:0005488 binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
MF GO:0005525 GTP binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006265 DNA topological change IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008150 biological_process IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0019001 guanyl nucleotide binding IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0032561 guanyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071103 DNA conformation change IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR024324 Condensin_cplx_su1_N 88 257
IPR032682 Cnd1_C 1007 1167
No external refs found!