Nbi_g04400 (GLR3.3, ATGLR3.3)

Aliases : GLR3.3, ATGLR3.3

Description : ligand-gated cation channel *(GLR) & original description: none

Gene families : OG0000075 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000075_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04400
Cluster	HCCA: Cluster_10

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00019p00181760	ATGLR2.9,...	Solute transport.channels.GLR ligand-gated cation channel	0.03	OrthoFinder output from all 47 species
AMTR_s00019p00181830	GLR2.1,...	Solute transport.channels.GLR ligand-gated cation channel	0.04	OrthoFinder output from all 47 species
AMTR_s00019p00182440	GLR2.8,...	Solute transport.channels.GLR ligand-gated cation channel	0.04	OrthoFinder output from all 47 species
AMTR_s00019p00182630	GLR2.7,...	Solute transport.channels.GLR ligand-gated cation channel	0.04	OrthoFinder output from all 47 species
AMTR_s00019p00183760	GLR2.7,...	Solute transport.channels.GLR ligand-gated cation channel	0.04	OrthoFinder output from all 47 species
Adi_g036165	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g059369	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Adi_g116155	ATGLR3.1, GLR2,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g33381	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g37486	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original description: none	0.04	OrthoFinder output from all 47 species
Als_g52489	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g01804	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Aop_g64217	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.08	OrthoFinder output from all 47 species
Aspi01Gene49377.t1	ATGLR3.5, GLR6,...	ligand-gated cation channel *(GLR) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene54272.t2	GLUR3, GLR3.4,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene54296.t1	GLR3.3,...	ligand-gated cation channel *(GLR) & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene65110.t1	GLR3.3,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene71555.t1	GLR3.3,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Azfi_s0132.g049186	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel *(GLR) & original...	0.04	OrthoFinder output from all 47 species
Ceric.01G008100.1	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original...	0.04	OrthoFinder output from all 47 species
Ceric.01G008200.1	ATGLR3.1, GLR2,...	ligand-gated cation channel *(GLR) & original...	0.04	OrthoFinder output from all 47 species
Ceric.01G024600.1	GLUR3, GLR3.4,...	ligand-gated cation channel *(GLR) & original...	0.03	OrthoFinder output from all 47 species
Ceric.03G069800.1	GLUR3, GLR3.4,...	ligand-gated cation channel *(GLR) & original...	0.06	OrthoFinder output from all 47 species
Ceric.23G023700.1	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original...	0.05	OrthoFinder output from all 47 species
Ceric.23G025600.1	GLR3.3,...	ligand-gated cation channel *(GLR) & original...	0.04	OrthoFinder output from all 47 species
Ceric.25G048200.1	GLR3.3,...	ligand-gated cation channel *(GLR) & original...	0.07	OrthoFinder output from all 47 species
Dac_g11124	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g46260	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Dcu_g36079	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.05	OrthoFinder output from all 47 species
Ehy_g17475	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g19579	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g20777	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
GSVIVT01013400001	GLR3.3, ATGLR3.3	Solute transport.channels.GLR ligand-gated cation channel	0.02	OrthoFinder output from all 47 species
GSVIVT01033129001	GLR2.8, ATGLR2.8	Solute transport.channels.GLR ligand-gated cation channel	0.03	OrthoFinder output from all 47 species
Gb_06330	ATGLR3.2,...	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
Gb_27767	GLR3.3, ATGLR3.3	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
LOC_Os09g26144.1	GLR2.8,...	ligand-gated cation channel (GLR)	0.02	OrthoFinder output from all 47 species
Len_g55769	ATGLR3.5, GLR6, GLR3.5	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10427025g0010	ATGLR3.5, GLR6, GLR3.5	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
MA_10434521g0010	GLR2.1, ATGLR2.1	ligand-gated cation channel (GLR)	0.02	OrthoFinder output from all 47 species
MA_110963g0010	GLR3.3, ATGLR3.3	ligand-gated cation channel (GLR)	0.02	OrthoFinder output from all 47 species
MA_43501g0010	GLR3.3, ATGLR3.3	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
MA_46902g0010	GLUR3, GLR3.4, ATGLR3.4	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
Msp_g32250	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.04	OrthoFinder output from all 47 species
Msp_g37146	ATGLR3.2,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g37768	ATGLR3.1, GLR2,...	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g47811	GLR2.7, ATGLR2.7	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0005.g002574	ATGLR3.5, GLR6, GLR3.5	ligand-gated cation channel *(GLR) & original...	0.05	OrthoFinder output from all 47 species
Sacu_v1.1_s0151.g023436	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original...	0.03	OrthoFinder output from all 47 species
Sam_g26434	No alias	ligand-gated cation channel *(GLR) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc02g077290.2.1	ATGLR2.9,...	ligand-gated cation channel (GLR)	0.03	OrthoFinder output from all 47 species
Spa_g08422	GLR3.3, ATGLR3.3	ligand-gated cation channel *(GLR) & original description: none	0.18	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0005215	transporter activity	None	Extended
MF	GO:0005216	monoatomic ion channel activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
MF	GO:0015075	monoatomic ion transmembrane transporter activity	None	Extended
MF	GO:0015267	channel activity	None	Extended
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEA	Interproscan
CC	GO:0016020	membrane	IEA	Interproscan
MF	GO:0022803	passive transmembrane transporter activity	None	Extended
MF	GO:0022834	ligand-gated channel activity	None	Extended
MF	GO:0022836	gated channel activity	None	Extended
MF	GO:0022839	monoatomic ion gated channel activity	None	Extended
MF	GO:0022857	transmembrane transporter activity	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0008194	UDP-glycosyltransferase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
BP	GO:0016051	carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0016758	hexosyltransferase activity	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044262	cellular carbohydrate metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001828	ANF_lig-bd_rcpt	57	416
IPR001638	Solute-binding_3/MltF_N	509	830
IPR001320	Iontro_rcpt_C	831	862

External Links

No external refs found!

Nbi_g04400 (GLR3.3, ATGLR3.3)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation