Nbi_g04227

Description : pre-mRNA-processing protein *(LUC7) & original description: none

Gene families : OG0003288 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003288_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g04227

Target	Alias	Description	ECC score	Gene Family Method
Adi_g043401	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07158	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene12359.t1	Aspi01Gene12359	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Cre14.g621300	No alias	No description available	0.01	OrthoFinder output from all 47 species
Lfl_g01936	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g06220.1	No alias	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Pir_g32313	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g02886	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Solyc03g093160.3.1	Solyc03g093160	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Zm00001e033431_P001	Zm00001e033431	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005685	U1 snRNP	IEA	Interproscan
BP	GO:0006376	mRNA splice site selection	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0003697	single-stranded DNA binding	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006952	defense response	IEP	HCCA
MF	GO:0008237	metallopeptidase activity	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004882	Luc7-rel	3	247

External Links

No external refs found!