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  5. Nbi_g04111

Nbi_g04111 (YCF32, PSBY)


Aliases : YCF32, PSBY

Description : component *(PsbY) of PS-II complex & original description: none


Gene families : OG0003004 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003004_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g04111
Cluster HCCA: Cluster_40

Target Alias Description ECC score Gene Family Method Actions
AT1G67740 YCF32, PSBY photosystem II BY 0.02 OrthoFinder output from all 47 species
Aev_g04515 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g27429 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Cba_g01675 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.33G057000.1 YCF32, PSBY,... component *(PsbY) of PS-II complex & original... 0.04 OrthoFinder output from all 47 species
Cre10.g452100 No alias Photosynthesis.photophosphorylation.photosystem II.PS-II... 0.01 OrthoFinder output from all 47 species
Dac_g05677 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.09 OrthoFinder output from all 47 species
Dac_g11818 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Dde_g25268 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species
Dde_g25972 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
LOC_Os08g02630.1 YCF32, PSBY,... component PsbY of PS-II complex 0.02 OrthoFinder output from all 47 species
Len_g16274 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Len_g41372 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.07 OrthoFinder output from all 47 species
MA_12201g0010 YCF32, PSBY component PsbY of PS-II complex 0.04 OrthoFinder output from all 47 species
Mp8g12730.1 YCF32, PSBY component PsbY of PS-II complex 0.03 OrthoFinder output from all 47 species
Msp_g06437 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Msp_g06438 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Ore_g27683 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.04 OrthoFinder output from all 47 species
Pir_g00365 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.05 OrthoFinder output from all 47 species
Pnu_g24253 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.02 OrthoFinder output from all 47 species
Pp3c8_24120V3.1 YCF32, PSBY, Pp3c8_24120 photosystem II BY 0.02 OrthoFinder output from all 47 species
Ppi_g32493 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.03 OrthoFinder output from all 47 species
Spa_g16230 YCF32, PSBY component *(PsbY) of PS-II complex & original description: none 0.06 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
CC GO:0009523 photosystem II IEA Interproscan
BP GO:0015979 photosynthesis IEA Interproscan
CC GO:0016020 membrane IEA Interproscan
MF GO:0030145 manganese ion binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000041 transition metal ion transport IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004601 peroxidase activity IEP HCCA
MF GO:0005381 iron ion transmembrane transporter activity IEP HCCA
BP GO:0006826 iron ion transport IEP HCCA
BP GO:0006979 response to oxidative stress IEP HCCA
MF GO:0016491 oxidoreductase activity IEP HCCA
MF GO:0016684 oxidoreductase activity, acting on peroxide as acceptor IEP HCCA
MF GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen IEP HCCA
MF GO:0016717 oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water IEP HCCA
MF GO:0020037 heme binding IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0034220 monoatomic ion transmembrane transport IEP HCCA
BP GO:0034755 iron ion transmembrane transport IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0046906 tetrapyrrole binding IEP HCCA
MF GO:0046915 transition metal ion transmembrane transporter activity IEP HCCA
MF GO:0050660 flavin adenine dinucleotide binding IEP HCCA
BP GO:0098655 monoatomic cation transmembrane transport IEP HCCA
BP GO:0098660 inorganic ion transmembrane transport IEP HCCA
BP GO:0098662 inorganic cation transmembrane transport IEP HCCA
InterPro domains Description Start Stop
IPR009388 PSII_PsbY 163 195
IPR009388 PSII_PsbY 232 264
IPR009388 PSII_PsbY 93 125
No external refs found!