1. Home
  2. Species
  3. Nephrolepis biserrata
  4. Sequence
  5. Nbi_g03949

Nbi_g03949


Description : core component *(GAR1) of H/ACA snoRNP RNA pseudouridylation complex & original description: none


Gene families : OG0006021 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006021_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g03949

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00004p00060080 evm_27.TU.AmTr_v1... RNA processing.RNA modification.pseudouridylation.H/ACA... 0.02 OrthoFinder output from all 47 species
AT3G03920 No alias H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 OrthoFinder output from all 47 species
Aop_g02745 No alias core component *(GAR1) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
Ceric.34G022300.1 Ceric.34G022300 core component *(GAR1) of H/ACA snoRNP RNA... 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000310.30 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder output from all 47 species
Cre13.g567850 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.06 OrthoFinder output from all 47 species
GSVIVT01033401001 No alias RNA processing.RNA modification.pseudouridylation.H/ACA... 0.03 OrthoFinder output from all 47 species
LOC_Os11g37080.1 LOC_Os11g37080 core component Gar1 of H/ACA small nucleolar... 0.02 OrthoFinder output from all 47 species
Mp5g08210.1 No alias core component Gar1 of H/ACA small nucleolar... 0.04 OrthoFinder output from all 47 species
Ore_g21960 No alias core component *(GAR1) of H/ACA snoRNP RNA... 0.03 OrthoFinder output from all 47 species
Pp3c25_15020V3.1 Pp3c25_15020 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 OrthoFinder output from all 47 species
Pp3c5_28430V3.1 Pp3c5_28430 H/ACA ribonucleoprotein complex, subunit Gar1/Naf1 protein 0.03 OrthoFinder output from all 47 species
Solyc10g078540.3.1 Solyc10g078540 core component Gar1 of H/ACA small nucleolar... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEA Interproscan
BP GO:0042254 ribosome biogenesis IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003697 single-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
BP GO:0006950 response to stress IEP HCCA
BP GO:0006952 defense response IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016829 lyase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0050896 response to stimulus IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR007504 H/ACA_rnp_Gar1/Naf1 45 131
No external refs found!