Nbi_g03693

Description : not classified & original description: none

Gene families : OG0003838 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003838_tree

Sequence : coding (download), protein (download)

Attention: This gene has low abundance.

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g03693

Target	Alias	Description	ECC score	Gene Family Method
AT4G31200	No alias	SWAP (Suppressor-of-White-APricot)/surp RNA-binding...	0.03	OrthoFinder output from all 47 species
Cre04.g222300	No alias	No description available	0.02	OrthoFinder output from all 47 species
GSVIVT01014608001	No alias	No description available	0.03	OrthoFinder output from all 47 species
Gb_16843	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Ore_g16011	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Pnu_g07312	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sam_g12496	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Solyc10g083200.2.1	Solyc10g083200	no hits & (original description: none)	0.03	OrthoFinder output from all 47 species
Tin_g14971	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006396	RNA processing	IEA	Interproscan
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

Type	GO Term	Name	Evidence	Source
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0016567	protein ubiquitination	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
BP	GO:0032446	protein modification by small protein conjugation	IEP	HCCA
CC	GO:0043227	membrane-bounded organelle	IEP	HCCA
CC	GO:0043231	intracellular membrane-bounded organelle	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000061	Surp	111	156
IPR006569	CID_dom	262	387

External Links

No external refs found!