Nbi_g03120 (PUB13, ATPUB13)

Aliases : PUB13, ATPUB13

Description : E3 ubiquitin ligase & original description: none

Gene families : OG0000092 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000092_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g03120

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00086p00031680	evm_27.TU.AmTr_v1...	U-box domain-containing protein 4 OS=Arabidopsis thaliana	0.02	OrthoFinder output from all 47 species
AT1G23030	No alias	ARM repeat superfamily protein	0.02	OrthoFinder output from all 47 species
AT1G29340	ATPUB17, PUB17	plant U-box 17	0.02	OrthoFinder output from all 47 species
AT2G28830	PUB12, AtPUB12	PLANT U-BOX 12	0.02	OrthoFinder output from all 47 species
Adi_g017517	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aev_g04770	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Ala_g06664	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07222	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g16594	PUB14, ATPUB14	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aob_g16654	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene01377.t1	PUB14, ATPUB14,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene36187.t1	ATPUB17, PUB17,...	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44181.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Aspi01Gene44183.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44184.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene44185.t1	ATPUB17, PUB17,...	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Cba_g16661	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ceric.07G010000.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.03	OrthoFinder output from all 47 species
Ceric.35G012000.1	PUB13, ATPUB13,...	E3 ubiquitin ligase & original description:...	0.04	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00020943.20	No alias	No description available	0.02	OrthoFinder output from all 47 species
Dac_g08480	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g12068	No alias	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g32706	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Dac_g35890	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
GSVIVT01007275001	PUB9, ATPUB9	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01020229001	No alias	Protein degradation.peptide tagging.Ubiquitin...	0.03	OrthoFinder output from all 47 species
GSVIVT01021265001	ATPUB17, PUB17	U-box domain-containing protein 17 OS=Arabidopsis thaliana	0.03	OrthoFinder output from all 47 species
Gb_10871	ATPUB17, PUB17	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Gb_12875	PUB13, ATPUB13	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
LOC_Os05g39930.1	LOC_Os05g39930	U-box domain-containing protein 16 OS=Arabidopsis...	0.02	OrthoFinder output from all 47 species
Len_g08149	ATPUB17, PUB17	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Len_g20959	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.03	OrthoFinder output from all 47 species
MA_5342g0010	PUB15	U-box domain-containing protein 12 OS=Oryza sativa...	0.02	OrthoFinder output from all 47 species
Msp_g31758	PUB8, B80	E3 ubiquitin ligase *(PUB8) & original description: none	0.03	OrthoFinder output from all 47 species
Msp_g37725	PUB13, ATPUB13	E3 ubiquitin ligase & original description: none	0.04	OrthoFinder output from all 47 species
Ore_g05165	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g28240	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pnu_g17953	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0011.g005097	No alias	not classified & original description: CDS=1-2154	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0050.g013821	No alias	not classified & original description: CDS=1-987	0.04	OrthoFinder output from all 47 species
Solyc02g072080.1.1	ATPUB17, PUB17,...	U-box domain-containing protein 17 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc03g114160.1.1	Solyc03g114160	E3 ubiquitin ligase (PUB)	0.03	OrthoFinder output from all 47 species
Solyc06g076040.3.1	PUB13, ATPUB13,...	E3 ubiquitin ligase (PUB)	0.04	OrthoFinder output from all 47 species
Solyc09g056450.4.1	PUB9, ATPUB9,...	U-box domain-containing protein 9 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc12g088360.2.1	Solyc12g088360	U-box domain-containing protein 4 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Solyc12g094610.3.1	PUB15, Solyc12g094610	U-box domain-containing protein 15 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species
Spa_g08558	ATPUB17, PUB17	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Spa_g25117	PUB14, ATPUB14	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Tin_g01104	No alias	E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Tin_g15274	PUB13, ATPUB13	E3 ubiquiTin ligase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e018578_P001	Zm00001e018578	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
Zm00001e028839_P001	Zm00001e028839	U-box domain-containing protein 16 OS=Arabidopsis...	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0004842	ubiquitin-protein transferase activity	IEA	Interproscan
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0016567	protein ubiquitination	IEA	Interproscan
MF	GO:0016740	transferase activity	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
MF	GO:0019787	ubiquitin-like protein transferase activity	None	Extended
BP	GO:0032446	protein modification by small protein conjugation	None	Extended
BP	GO:0036211	protein modification process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043412	macromolecule modification	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0070647	protein modification by small protein conjugation or removal	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0140096	catalytic activity, acting on a protein	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended

Toggle parental

Type	GO Term	Name	Evidence	Source
MF	GO:0003700	DNA-binding transcription factor activity	IEP	HCCA
BP	GO:0007165	signal transduction	IEP	HCCA
MF	GO:0008289	lipid binding	IEP	HCCA
MF	GO:0016746	acyltransferase activity	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000225	Armadillo	485	523
IPR000225	Armadillo	402	441
IPR000225	Armadillo	444	482
IPR003613	Ubox_domain	287	357

External Links

No external refs found!

Nbi_g03120 (PUB13, ATPUB13)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation