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  5. GSVIVT01031251001

GSVIVT01031251001


Description : 35.1.5 not assigned.no ontology.pentatricopeptide (PPR) repeat-containing protein Encodes LPA66, a chloroplast protein of the pentatricopeptide repeat family. In lpa66 mutants, editing of psbF that converts serine to phenylalanine is specifically impaired. lpa66 mutants also display a high chlorophyll fluorescence phenotype. LOW PSII ACCUMULATION 66 (LPA66)


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01031251001
Cluster HCCA cluster: Cluster_120

Target Alias Description ECC score Gene Family Method Actions
AT1G18485 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.1 Gene family
LOC_Os01g10800 Os01g0205200 No description available 0.03 Gene family
LOC_Os01g41650 Os01g0600400 No description available 0.02 Gene family
LOC_Os01g62910 Os01g0848300 No description available 0.02 Gene family
LOC_Os03g04390 Os03g0136700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os04g02850 Os04g0118700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
LOC_Os04g39410 Os04g0469400 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.03 Gene family
LOC_Os10g39460 Os10g0540100 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_10426444g0010 No alias No description available 0.05 Gene family
MA_123466g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_20622g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_68084g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Smo85415 PACid_15419909 No description available 0.02 Gene family
Smo98955 PACid_15417483 No description available 0.02 Gene family
Solyc01g095690.2.1 Solyc01g095690.2 No description available 0.02 Gene family
Solyc02g081900.3.1 Solyc02g081900.3 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Solyc12g096510.2.1 Solyc12g096510.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.01 Gene family
Zm00001d031535 GRMZM2G076257 No description available 0.03 Gene family
Zm00001d037036 GRMZM2G129783 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 319 363
IPR002885 Pentatricopeptide_repeat 121 169
IPR002885 Pentatricopeptide_repeat 293 318
IPR002885 Pentatricopeptide_repeat 231 249
IPR002885 Pentatricopeptide_repeat 457 485
IPR032867 DYW_dom 497 614
No external refs found!