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  5. Nbi_g02470

Nbi_g02470 (ATSMC2)


Aliases : ATSMC2

Description : component *(CAP-E2/SMC2) of condensin I/II complex & original description: none


Gene families : OG0005512 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005512_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g02470
Cluster HCCA: Cluster_17

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00029p00193070 ATSMC2,... Cell cycle.mitosis and meiosis.chromatin... 0.15 OrthoFinder output from all 47 species
AT3G47460 ATSMC2 Structural maintenance of chromosomes (SMC) family protein 0.09 OrthoFinder output from all 47 species
AT5G62410 TTN3, ATSMC4,... structural maintenance of chromosomes 2 0.16 OrthoFinder output from all 47 species
Adi_g078006 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.02 OrthoFinder output from all 47 species
Adi_g117141 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Aev_g40103 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.07 OrthoFinder output from all 47 species
Ala_g23199 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.21 OrthoFinder output from all 47 species
Als_g01195 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.29 OrthoFinder output from all 47 species
Aop_g05581 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.12 OrthoFinder output from all 47 species
Aspi01Gene72499.t1 ATSMC2, Aspi01Gene72499 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.18 OrthoFinder output from all 47 species
Azfi_s0003.g007776 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.05 OrthoFinder output from all 47 species
Ceric.12G044400.1 ATSMC2, Ceric.12G044400 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.29 OrthoFinder output from all 47 species
Ceric.15G020500.1 ATSMC2, Ceric.15G020500 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.33 OrthoFinder output from all 47 species
Cpa|evm.model.tig00000615.55 TTN3, ATSMC4,... Cell cycle.mitosis and meiosis.chromatin... 0.07 OrthoFinder output from all 47 species
Cre02.g086650 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.09 OrthoFinder output from all 47 species
Dac_g14763 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.22 OrthoFinder output from all 47 species
Dcu_g03186 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.24 OrthoFinder output from all 47 species
GSVIVT01018715001 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.12 OrthoFinder output from all 47 species
Gb_17843 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.23 OrthoFinder output from all 47 species
LOC_Os01g67740.1 ATSMC2, LOC_Os01g67740 component CAP-E2/SMC2 of condensin I/II complex 0.07 OrthoFinder output from all 47 species
Len_g12256 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.08 OrthoFinder output from all 47 species
Lfl_g37430 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.17 OrthoFinder output from all 47 species
MA_15346g0010 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.11 OrthoFinder output from all 47 species
Mp1g04330.1 ATSMC2 component CAP-E2/SMC2 of condensin I/II complex 0.21 OrthoFinder output from all 47 species
Msp_g14469 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.32 OrthoFinder output from all 47 species
Ppi_g29913 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.11 OrthoFinder output from all 47 species
Sacu_v1.1_s0197.g025517 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.12 OrthoFinder output from all 47 species
Sam_g14601 No alias component *(CAP-E2/SMC2) of condensin I/II complex &... 0.16 OrthoFinder output from all 47 species
Smo137981 ATSMC2 Cell cycle.mitosis and meiosis.chromatin... 0.09 OrthoFinder output from all 47 species
Solyc03g093250.2.1 ATSMC2, Solyc03g093250 component CAP-E2/SMC2 of condensin I/II complex 0.05 OrthoFinder output from all 47 species
Solyc03g093260.3.1 ATSMC2, Solyc03g093260 component CAP-E2/SMC2 of condensin I/II complex 0.1 OrthoFinder output from all 47 species
Spa_g41237 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.12 OrthoFinder output from all 47 species
Tin_g10631 ATSMC2 component *(CAP-E2/SMC2) of condensin I/II complex &... 0.23 OrthoFinder output from all 47 species
Zm00001e018930_P001 ATSMC2, Zm00001e018930 component CAP-E2/SMC2 of condensin I/II complex 0.12 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
MF GO:0005524 ATP binding IEA Interproscan
CC GO:0005694 chromosome IEA Interproscan
BP GO:0051276 chromosome organization IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000775 chromosome, centromeric region IEP HCCA
CC GO:0000796 condensin complex IEP HCCA
MF GO:0003774 cytoskeletal motor activity IEP HCCA
MF GO:0003777 microtubule motor activity IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0004672 protein kinase activity IEP HCCA
MF GO:0004748 ribonucleoside-diphosphate reductase activity, thioredoxin disulfide as acceptor IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006259 DNA metabolic process IEP HCCA
BP GO:0006260 DNA replication IEP HCCA
BP GO:0006468 protein phosphorylation IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006793 phosphorus metabolic process IEP HCCA
BP GO:0006796 phosphate-containing compound metabolic process IEP HCCA
BP GO:0006807 nitrogen compound metabolic process IEP HCCA
BP GO:0007017 microtubule-based process IEP HCCA
BP GO:0007018 microtubule-based movement IEP HCCA
BP GO:0007059 chromosome segregation IEP HCCA
BP GO:0007076 mitotic chromosome condensation IEP HCCA
MF GO:0008017 microtubule binding IEP HCCA
MF GO:0008092 cytoskeletal protein binding IEP HCCA
MF GO:0008094 ATP-dependent activity, acting on DNA IEP HCCA
BP GO:0008152 metabolic process IEP HCCA
BP GO:0009165 nucleotide biosynthetic process IEP HCCA
BP GO:0009262 deoxyribonucleotide metabolic process IEP HCCA
BP GO:0009263 deoxyribonucleotide biosynthetic process IEP HCCA
MF GO:0015631 tubulin binding IEP HCCA
MF GO:0016301 kinase activity IEP HCCA
BP GO:0016310 phosphorylation IEP HCCA
MF GO:0016725 oxidoreductase activity, acting on CH or CH2 groups IEP HCCA
MF GO:0016728 oxidoreductase activity, acting on CH or CH2 groups, disulfide as acceptor IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016772 transferase activity, transferring phosphorus-containing groups IEP HCCA
MF GO:0016773 phosphotransferase activity, alcohol group as acceptor IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0022414 reproductive process IEP HCCA
BP GO:0030261 chromosome condensation IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0036211 protein modification process IEP HCCA
BP GO:0043170 macromolecule metabolic process IEP HCCA
BP GO:0043412 macromolecule modification IEP HCCA
BP GO:0044237 cellular metabolic process IEP HCCA
BP GO:0044238 primary metabolic process IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0045132 meiotic chromosome segregation IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
MF GO:0061731 ribonucleoside-diphosphate reductase activity IEP HCCA
BP GO:0071704 organic substance metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
BP GO:0090407 organophosphate biosynthetic process IEP HCCA
CC GO:0098687 chromosomal region IEP HCCA
BP GO:0098813 nuclear chromosome segregation IEP HCCA
MF GO:0140096 catalytic activity, acting on a protein IEP HCCA
MF GO:0140097 catalytic activity, acting on DNA IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140658 ATP-dependent chromatin remodeler activity IEP HCCA
BP GO:1901137 carbohydrate derivative biosynthetic process IEP HCCA
BP GO:1901293 nucleoside phosphate biosynthetic process IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
BP GO:1903046 meiotic cell cycle process IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR010935 SMC_hinge 518 637
IPR003395 RecF/RecN/SMC_N 2 1161
No external refs found!