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  5. Nbi_g01496

Nbi_g01496 (VCS)


Aliases : VCS

Description : scaffold component *(VCS) of mRNA decapping complex & original description: none


Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Nbi_g01496

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00061p00131900 VCS,... RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
AT3G13290 VCR varicose-related 0.03 OrthoFinder output from all 47 species
AT3G13300 VCS Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Adi_g055830 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Adi_g107355 VCR not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aev_g30114 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Ala_g13274 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Als_g15285 VCS not classified & original description: none 0.02 OrthoFinder output from all 47 species
Als_g63425 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Aob_g04505 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Aop_g08777 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.05 OrthoFinder output from all 47 species
Cba_g27245 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.02 OrthoFinder output from all 47 species
Dac_g14564 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g05835 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Dcu_g11716 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.06 OrthoFinder output from all 47 species
Ehy_g20389 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
GSVIVT01006976001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.03 OrthoFinder output from all 47 species
GSVIVT01014783001 VCS RNA processing.RNA decay.deadenylation-dependent... 0.05 OrthoFinder output from all 47 species
Gb_04906 VCS scaffold component VCS of mRNA decapping complex 0.06 OrthoFinder output from all 47 species
LOC_Os02g49090.1 VCS, LOC_Os02g49090 scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
LOC_Os06g19660.1 VCS, LOC_Os06g19660 scaffold component VCS of mRNA decapping complex 0.03 OrthoFinder output from all 47 species
MA_10427487g0020 VCS Varicose-related protein OS=Arabidopsis thaliana... 0.03 OrthoFinder output from all 47 species
MA_10431534g0020 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
MA_39123g0010 VCS Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
Mp3g11710.1 VCS scaffold component VCS of mRNA decapping complex 0.02 OrthoFinder output from all 47 species
Msp_g14526 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Msp_g26178 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.03 OrthoFinder output from all 47 species
Ore_g09332 VCS scaffold component *(VCS) of mRNA decapping complex &... 0.08 OrthoFinder output from all 47 species
Ppi_g10110 VCS scaffold component *(VCS) of mRNA decaPping complex &... 0.02 OrthoFinder output from all 47 species
Spa_g07074 VCR scaffold component *(VCS) of mRNA decapping complex &... 0.04 OrthoFinder output from all 47 species
Spa_g37076 VCR not classified & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e023399_P003 VCS, Zm00001e023399 scaffold component VCS of mRNA decapping complex 0.05 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000413 protein peptidyl-prolyl isomerization IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003682 chromatin binding IEP HCCA
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003755 peptidyl-prolyl cis-trans isomerase activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0003950 NAD+ ADP-ribosyltransferase activity IEP HCCA
MF GO:0005488 binding IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0007062 sister chromatid cohesion IEP HCCA
BP GO:0007064 mitotic sister chromatid cohesion IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
MF GO:0016763 pentosyltransferase activity IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0016859 cis-trans isomerase activity IEP HCCA
BP GO:0018193 peptidyl-amino acid modification IEP HCCA
BP GO:0018208 peptidyl-proline modification IEP HCCA
BP GO:0022402 cell cycle process IEP HCCA
BP GO:0032774 RNA biosynthetic process IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1903047 mitotic cell cycle process IEP HCCA
InterPro domains Description Start Stop
IPR032401 EDC4_WD40 208 522
No external refs found!