MA_302333g0010


Description : Pentatricopeptide repeat-containing protein At5g55840 OS=Arabidopsis thaliana (sp|q9lvq5|pp432_arath : 783.0)


Gene families : OG_01_0000731 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000731_tree ,
OG_02_0000430 (LandPlants) Phylogenetic Tree(s): OG_02_0000430_tree ,
OG_03_0000220 (SeedPlants) Phylogenetic Tree(s): OG_03_0000220_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_302333g0010
Cluster HCCA: Cluster_73

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00019p00203030 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 Archaeplastida
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
AMTR_s00080p00074320 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At4g26680,... 0.02 Archaeplastida
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT1G19290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Archaeplastida
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.08 Archaeplastida
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Archaeplastida
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Archaeplastida
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.06 Archaeplastida
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 Archaeplastida
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.07 Archaeplastida
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
GSVIVT01031896001 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 Archaeplastida
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.06 Archaeplastida
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.04 Archaeplastida
Gb_18022 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.06 Archaeplastida
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.06 Archaeplastida
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.06 Archaeplastida
Gb_30066 No alias Pentatricopeptide repeat-containing protein At5g39710... 0.03 Archaeplastida
LOC_Os12g21930.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.02 Archaeplastida
MA_59385g0010 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.07 Archaeplastida
MA_774352g0010 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.04 Archaeplastida
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.05 Archaeplastida
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 Archaeplastida
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 Archaeplastida
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 LandPlants
AMTR_s00059p00156460 evm_27.TU.AmTr_v1... Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
AMTR_s00061p00202160 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g55840... 0.02 LandPlants
AT1G11710 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT1G19290 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 LandPlants
AT2G02150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 LandPlants
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 LandPlants
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 LandPlants
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 LandPlants
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 LandPlants
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.07 LandPlants
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 LandPlants
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
GSVIVT01025017001 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
GSVIVT01031896001 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 LandPlants
Gb_03188 No alias Pentatricopeptide repeat-containing protein At2g15630,... 0.03 LandPlants
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.05 LandPlants
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.06 LandPlants
Gb_18022 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.06 LandPlants
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.09 LandPlants
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.05 LandPlants
Gb_29383 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
Solyc03g007390.4.1 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 LandPlants
Solyc07g047620.3.1 No alias Pentatricopeptide repeat-containing protein At4g26680,... 0.02 LandPlants
Solyc10g051010.3.1 No alias Pentatricopeptide repeat-containing protein At2g15980... 0.03 LandPlants
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.03 LandPlants
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants
AMTR_s00048p00141020 evm_27.TU.AmTr_v1... Pentatricopeptide repeat-containing protein At5g01110... 0.03 SeedPlants
AT4G26680 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 SeedPlants
AT5G01110 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 SeedPlants
AT5G40400 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
AT5G55840 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 SeedPlants
AT5G59900 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.02 SeedPlants
GSVIVT01008360001 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 SeedPlants
GSVIVT01009638001 No alias Putative pentatricopeptide repeat-containing protein... 0.05 SeedPlants
GSVIVT01010244001 No alias Putative pentatricopeptide repeat-containing protein... 0.01 SeedPlants
GSVIVT01037263001 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.02 SeedPlants
Gb_03214 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Gb_07698 No alias Pentatricopeptide repeat-containing protein At3g54980,... 0.02 SeedPlants
Gb_18022 No alias Pentatricopeptide repeat-containing protein At5g01110... 0.06 SeedPlants
Gb_20239 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.02 SeedPlants
Gb_28619 No alias Pentatricopeptide repeat-containing protein At1g11710,... 0.03 SeedPlants
Gb_29383 No alias Putative pentatricopeptide repeat-containing protein... 0.02 SeedPlants
Solyc02g021270.3.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 SeedPlants
Solyc03g007390.4.1 No alias Pentatricopeptide repeat-containing protein At5g40400... 0.03 SeedPlants
Solyc11g073270.1.1 No alias Putative pentatricopeptide repeat-containing protein... 0.04 SeedPlants
Zm00001e035584_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 SeedPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence

Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 156 200
IPR002885 Pentatricopeptide_repeat 602 634
IPR002885 Pentatricopeptide_repeat 428 459
IPR002885 Pentatricopeptide_repeat 872 894
IPR002885 Pentatricopeptide_repeat 972 1019
IPR002885 Pentatricopeptide_repeat 291 340
IPR002885 Pentatricopeptide_repeat 797 844
IPR002885 Pentatricopeptide_repeat 221 267
IPR002885 Pentatricopeptide_repeat 641 690
IPR002885 Pentatricopeptide_repeat 711 760
IPR002885 Pentatricopeptide_repeat 361 410
IPR002885 Pentatricopeptide_repeat 537 585
IPR002885 Pentatricopeptide_repeat 912 951
IPR002885 Pentatricopeptide_repeat 466 515
No external refs found!