Nbi_g00713

Description : component *(uL3c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0006843 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0006843_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g00713
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
Aop_g14058	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 39 species
Aop_g26780	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 39 species
Aop_g42849	No alias	not classified & original description: none	0.07	OrthoFinder output from all 39 species
Azfi_s0242.g059806	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 39 species
Dac_g08147	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 39 species
Dde_g02079	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 39 species
Msp_g02349	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 39 species
Pir_g05542	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 39 species
Ppi_g07342	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 39 species
Sacu_v1.1_s0060.g015211	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 39 species
Sam_g11021	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 39 species
Sam_g24523	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 39 species
Sam_g38828	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 39 species
Spa_g05012	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.14	OrthoFinder output from all 39 species
Tin_g06461	No alias	component *(uL3c) of large plastid ribosomal-subunit...	0.06	OrthoFinder output from all 39 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003755	peptidyl-prolyl cis-trans isomerase activity	IEP	HCCA
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0006810	transport	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0016859	cis-trans isomerase activity	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0051179	localization	IEP	HCCA
BP	GO:0051234	establishment of localization	IEP	HCCA
BP	GO:0051641	cellular localization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
BP	GO:0071702	organic substance transport	IEP	HCCA
BP	GO:0071705	nitrogen compound transport	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR000597	Ribosomal_L3	174	266

External Links

No external refs found!

Nbi_g00713

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation