Nbi_g00588

Description : component *(uL24c) of large plastid ribosomal-subunit proteome & original description: none

Gene families : OG0010771 (OrthoFinder output from all 39 species) Phylogenetic Tree(s): OG0010771_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Nbi_g00588
Cluster	HCCA: Cluster_7

Target	Alias	Description	ECC score	Gene Family Method
Als_g04734	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 39 species
Aop_g00183	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 39 species
Cba_g02325	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.02	OrthoFinder output from all 39 species
Dac_g00331	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.05	OrthoFinder output from all 39 species
Dde_g05722	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.03	OrthoFinder output from all 39 species
Ehy_g22263	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 39 species
Len_g05147	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 39 species
Len_g32209	No alias	not classified & original description: none	0.04	OrthoFinder output from all 39 species
Msp_g18519	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 39 species
Pir_g07148	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.07	OrthoFinder output from all 39 species
Ppi_g33772	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.01	OrthoFinder output from all 39 species
Spa_g00224	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.1	OrthoFinder output from all 39 species
Tin_g02402	No alias	component *(uL24c) of large plastid ribosomal-subunit...	0.08	OrthoFinder output from all 39 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
MF	GO:0004418	hydroxymethylbilane synthase activity	IEP	HCCA
BP	GO:0006414	translational elongation	IEP	HCCA
BP	GO:0006457	protein folding	IEP	HCCA
BP	GO:0008104	protein localization	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
CC	GO:0009521	photosystem	IEP	HCCA
CC	GO:0009523	photosystem II	IEP	HCCA
CC	GO:0009654	photosystem II oxygen evolving complex	IEP	HCCA
BP	GO:0015031	protein transport	IEP	HCCA
BP	GO:0015979	photosynthesis	IEP	HCCA
MF	GO:0016765	transferase activity, transferring alkyl or aryl (other than methyl) groups	IEP	HCCA
MF	GO:0019843	rRNA binding	IEP	HCCA
CC	GO:0019898	extrinsic component of membrane	IEP	HCCA
BP	GO:0033013	tetrapyrrole metabolic process	IEP	HCCA
BP	GO:0033014	tetrapyrrole biosynthetic process	IEP	HCCA
BP	GO:0033036	macromolecule localization	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0045184	establishment of protein localization	IEP	HCCA
BP	GO:0070727	cellular macromolecule localization	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
CC	GO:1902494	catalytic complex	IEP	HCCA
CC	GO:1990204	oxidoreductase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003256	Ribosomal_L24	113	176
IPR005824	KOW	80	111

External Links

No external refs found!

Nbi_g00588

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation