GSVIVT01027942001


Description : 27.3.69 RNA.regulation of transcription.SET-domain transcriptional regulator family Encodes a SU(VAR)3-9 homolog, a SET domain protein. Known SET domain proteins are involved in epigenetic control of gene expression and act as histone methyltransferases. There are 10 SUVH genes in Arabidopsis and members of this subfamily of the SET proteins have an additional conserved SRA domain. A plant line expressing an RNAi construct directed against this gene has reduced agrobacterium-mediated tumor formation. SU(VAR)3-9 homolog 9 (SUVH9)


Gene families : OG_01_0000166 (Gene family) Phylogenetic Tree(s): OG0000166_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01027942001
Cluster HCCA cluster: Cluster_228

Target Alias Description ECC score Gene Family Method Actions
GSVIVT01005913001 No alias No description available 0.03 Gene family
MA_37876g0010 No alias 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Solyc02g094520.3.1 Solyc02g094520.3 27.3.69 RNA.regulation of transcription.SET-domain... 0.02 Gene family
Solyc03g093700.2.1 Solyc03g093700.2 27.3.69 RNA.regulation of transcription.SET-domain... 0.03 Gene family
Zm00001d005650 GRMZM2G300955 No description available 0.03 Gene family

Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEA InterProScan
MF GO:0008270 zinc ion binding IEA InterProScan
MF GO:0018024 histone-lysine N-methyltransferase activity IEA InterProScan
BP GO:0034968 histone lysine methylation IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR003105 SRA_YDG 262 296
IPR003105 SRA_YDG 198 256
IPR001214 SET_dom 443 575
IPR007728 Pre-SET_dom 328 424
No external refs found!