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  5. Ehy_g31380

Ehy_g31380 (EMB2271)


Aliases : EMB2271

Description : SSU processome assembly factor *(RRP9/YAO1) & original description: none


Gene families : OG0006246 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0006246_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g31380
Cluster HCCA: Cluster_71

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00155p00078230 EMB2271,... Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
AT4G05410 YAO Transducin/WD40 repeat-like superfamily protein 0.04 OrthoFinder output from all 47 species
Cpa|evm.model.tig00021179.21 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.02 OrthoFinder output from all 47 species
Cre06.g278175 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.04 OrthoFinder output from all 47 species
Dde_g02235 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
GSVIVT01021618001 EMB2271 Protein biosynthesis.cytosolic ribosome.small subunit... 0.03 OrthoFinder output from all 47 species
LOC_Os03g42770.1 YAO, LOC_Os03g42770 SSU processome assembly factor (RRP9/YAO1) 0.06 OrthoFinder output from all 47 species
MA_10426194g0010 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
Mp8g03800.1 EMB2271 SSU processome assembly factor (RRP9/YAO1) 0.05 OrthoFinder output from all 47 species
Solyc02g069770.3.1 EMB2271, Solyc02g069770 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species
Spa_g18346 EMB2271 SSU processome assembly factor *(RRP9/YAO1) & original... 0.03 OrthoFinder output from all 47 species
Zm00001e012407_P002 EMB2271, Zm00001e012407 SSU processome assembly factor (RRP9/YAO1) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
BP GO:0001510 RNA methylation IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003690 double-stranded DNA binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005886 plasma membrane IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006400 tRNA modification IEP HCCA
BP GO:0006553 lysine metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
BP GO:0008652 amino acid biosynthetic process IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
MF GO:0008837 diaminopimelate epimerase activity IEP HCCA
BP GO:0009066 aspartate family amino acid metabolic process IEP HCCA
BP GO:0009067 aspartate family amino acid biosynthetic process IEP HCCA
BP GO:0009085 lysine biosynthetic process IEP HCCA
BP GO:0009089 lysine biosynthetic process via diaminopimelate IEP HCCA
BP GO:0009306 protein secretion IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0016426 tRNA (adenine) methyltransferase activity IEP HCCA
MF GO:0016429 tRNA (adenine-N1-)-methyltransferase activity IEP HCCA
MF GO:0016854 racemase and epimerase activity IEP HCCA
MF GO:0016855 racemase and epimerase activity, acting on amino acids and derivatives IEP HCCA
BP GO:0030488 tRNA methylation IEP HCCA
CC GO:0030684 preribosome IEP HCCA
CC GO:0031515 tRNA (m1A) methyltransferase complex IEP HCCA
CC GO:0032040 small-subunit processome IEP HCCA
BP GO:0032259 methylation IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0032977 membrane insertase activity IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
CC GO:0034708 methyltransferase complex IEP HCCA
BP GO:0035592 establishment of protein localization to extracellular region IEP HCCA
MF GO:0036361 racemase activity, acting on amino acids and derivatives IEP HCCA
BP GO:0043414 macromolecule methylation IEP HCCA
CC GO:0043527 tRNA methyltransferase complex IEP HCCA
BP GO:0043648 dicarboxylic acid metabolic process IEP HCCA
BP GO:0046394 carboxylic acid biosynthetic process IEP HCCA
BP GO:0046451 diaminopimelate metabolic process IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0047661 amino-acid racemase activity IEP HCCA
BP GO:0071692 protein localization to extracellular region IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140104 molecular carrier activity IEP HCCA
BP GO:0140352 export from cell IEP HCCA
MF GO:0140597 protein carrier chaperone IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
BP GO:1901607 alpha-amino acid biosynthetic process IEP HCCA
CC GO:1990234 transferase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR001680 WD40_repeat 341 376
IPR001680 WD40_repeat 258 295
IPR001680 WD40_repeat 304 335
IPR001680 WD40_repeat 223 253
No external refs found!