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  5. Ehy_g29417

Ehy_g29417


Description : CENH3-recruitment factor *(KNL2) & original description: none


Gene families : OG0002725 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002725_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g29417
Cluster HCCA: Cluster_35

Target Alias Description ECC score Gene Family Method Actions
Ala_g18676 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g09150 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.14G056500.1 Ceric.14G056500 CENH3-recruitment factor *(KNL2) & original description:... 0.03 OrthoFinder output from all 47 species
LOC_Os01g34610.1 LOC_Os01g34610 no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
LOC_Os04g28050.1 LOC_Os04g28050 CENH3-recruitment factor (KNL2/Mis18) 0.05 OrthoFinder output from all 47 species
Len_g22487 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.03 OrthoFinder output from all 47 species
MA_10430113g0010 No alias CENH3-recruitment factor (KNL2/Mis18) 0.02 OrthoFinder output from all 47 species
Spa_g07078 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g19080 No alias CENH3-recruitment factor *(KNL2) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e033849_P002 Zm00001e033849 no hits & (original description: none) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0005488 binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
BP GO:0009719 response to endogenous stimulus IEP HCCA
BP GO:0009725 response to hormone IEP HCCA
BP GO:0010033 response to organic substance IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0042221 response to chemical IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR015216 SANTA 29 118
No external refs found!