GSVIVT01021246001


Description : No description available


Gene families : OG_01_0000001 (Gene family) Phylogenetic Tree(s): OG0000001_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01021246001
Cluster HCCA cluster: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
AT1G11290 CRR22 Pentatricopeptide repeat (PPR) superfamily protein 0.06 Gene family
AT1G17630 No alias Pentatricopeptide repeat (PPR-like) superfamily protein 0.03 Gene family
AT3G01580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.06 Gene family
AT3G03580 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.05 Gene family
AT3G15930 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Gene family
AT3G26782 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 Gene family
AT3G53360 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT3G63370 OTP86 Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G13650 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.05 Gene family
AT4G15720 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.07 Gene family
AT4G18750 DOT4 Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
AT4G21065 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.04 Gene family
AT4G35130 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Gene family
AT5G52850 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.04 Gene family
LOC_Os01g41650 Os01g0600400 No description available 0.05 Gene family
LOC_Os01g72930 Os01g0959600 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os03g04390 Os03g0136700 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
LOC_Os05g50950 Os05g0586900 No description available 0.02 Gene family
LOC_Os07g20420 Os07g0299800 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
LOC_Os11g01836 Os11g0109600 No description available 0.02 Gene family
MA_10427342g0010 No alias No description available 0.02 Gene family
MA_106123g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_116829g0010 No alias No description available 0.03 Gene family
MA_122899g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_136326g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_14938g0010 No alias No description available 0.03 Gene family
MA_175688g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_20899g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_25584g0010 No alias No description available 0.02 Gene family
MA_2991g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_34492g0020 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
MA_50118g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
MA_7691g0010 No alias No description available 0.02 Gene family
MA_86894g0010 No alias No description available 0.03 Gene family
MA_94165g0010 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc01g007850.2.1 Solyc01g007850.2 No description available 0.03 Gene family
Solyc01g080190.3.1 Solyc01g080190.3 No description available 0.05 Gene family
Solyc01g081560.2.1 Solyc01g081560.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc02g088650.1.1 Solyc02g088650.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc03g007840.1.1 Solyc03g007840.1 35.1.27 not assigned.no ontology.tetratricopeptide... 0.03 Gene family
Solyc03g025700.1.1 Solyc03g025700.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.06 Gene family
Solyc03g082830.2.1 Solyc03g082830.2 No description available 0.06 Gene family
Solyc04g063300.2.1 Solyc04g063300.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Solyc04g076330.2.1 Solyc04g076330.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc06g082880.2.1 Solyc06g082880.2 No description available 0.02 Gene family
Solyc07g053520.2.1 Solyc07g053520.2 No description available 0.05 Gene family
Solyc07g055310.1.1 Solyc07g055310.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc08g023640.1.1 Solyc08g023640.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.04 Gene family
Solyc09g010070.1.1 Solyc09g010070.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc09g065710.1.1 Solyc09g065710.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc11g005960.1.1 Solyc11g005960.1 No description available 0.03 Gene family
Solyc11g008940.1.1 Solyc11g008940.1 No description available 0.03 Gene family
Solyc11g010220.2.1 Solyc11g010220.2 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Solyc11g071370.1.1 Solyc11g071370.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Solyc12g006575.1.1 Solyc12g006575.1 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.05 Gene family
Zm00001d025656 No alias 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Zm00001d025870 GRMZM5G827485 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d027555 GRMZM2G176523 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.07 Gene family
Zm00001d037254 GRMZM2G060337 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.03 Gene family
Zm00001d039873 GRMZM2G380195 No description available 0.03 Gene family
Zm00001d042039 GRMZM2G060536 35.1.5 not assigned.no ontology.pentatricopeptide (PPR)... 0.02 Gene family
Zm00001d052794 GRMZM2G140600 No description available 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0008270 zinc ion binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR032867 DYW_dom 563 687
IPR002885 Pentatricopeptide_repeat 389 436
IPR002885 Pentatricopeptide_repeat 289 336
IPR002885 Pentatricopeptide_repeat 169 198
IPR002885 Pentatricopeptide_repeat 217 247
IPR002885 Pentatricopeptide_repeat 465 488
No external refs found!