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  5. Ehy_g26943

Ehy_g26943 (UPF1, ATUPF1, LBA1)


Aliases : UPF1, ATUPF1, LBA1

Description : not classified & original description: none


Gene families : OG0008539 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0008539_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g26943
Cluster HCCA: Cluster_88

Target Alias Description ECC score Gene Family Method Actions
Dac_g28209 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Gb_11778 UPF1, ATUPF1, LBA1 Regulator of nonsense transcripts 1 homolog... 0.02 OrthoFinder output from all 47 species
MA_10432328g0040 No alias no hits & (original description: none) 0.02 OrthoFinder output from all 47 species
Msp_g28991 No alias not classified & original description: none 0.01 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0005216 monoatomic ion channel activity IEP HCCA
MF GO:0005507 copper ion binding IEP HCCA
MF GO:0008199 ferric iron binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
MF GO:0015276 ligand-gated monoatomic ion channel activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
MF GO:0022834 ligand-gated channel activity IEP HCCA
MF GO:0022836 gated channel activity IEP HCCA
MF GO:0022839 monoatomic ion gated channel activity IEP HCCA
MF GO:0031267 small GTPase binding IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
MF GO:0051020 GTPase binding IEP HCCA
InterPro domains Description Start Stop
IPR041679 DNA2/NAM7-like_C 1238 1421
IPR012317 Poly(ADP-ribose)pol_cat_dom 1862 1977
IPR012317 Poly(ADP-ribose)pol_cat_dom 1645 1818
IPR041677 DNA2/NAM7_AAA_11 1127 1226
IPR041677 DNA2/NAM7_AAA_11 793 919
No external refs found!