GSVIVT01016562001


Description : 27.1.1 RNA.processing.splicing encodes an SC35-like splicing factor that is localized to nuclear specks. SC35-like splicing factor 30 (SCL30)


Gene families : OG_01_0000558 (Gene family) Phylogenetic Tree(s): OG0000558_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01016562001
Cluster HCCA cluster: Cluster_171

Target Alias Description ECC score Gene Family Method Actions
AT1G55310 SR33, At-SCL33,... SC35-like splicing factor 33 0.03 Gene family
AT3G55460 SCL30, At-SCL30 SC35-like splicing factor 30 0.04 Gene family
Cpa|evm.model.tig00000402.16 No alias 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.02 Gene family
Cre13.g586916 No alias 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.04 Gene family
LOC_Os03g24890 Os03g0363800 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.02 Gene family
LOC_Os07g43950 Os07g0633200 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.02 Gene family
Solyc01g080660.3.1 Solyc01g080660.3 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.04 Gene family
Zm00001d022243 GRMZM5G867185 27.1.1 RNA.processing.splicing Encodes a SR spliceosome... 0.03 Gene family
Zm00001d030739 GRMZM2G065066,... No description available 0.02 Gene family
Zm00001d048609 GRMZM2G145725 27.1.1 RNA.processing.splicing encodes an SC35-like... 0.03 Gene family

Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR000504 RRM_dom 119 188
No external refs found!