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  5. Ehy_g20802

Ehy_g20802


Description : plant-specific E3 ubiquitin ligase *(RSL/RFA) & original description: none


Gene families : OG0000695 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000695_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g20802

Target Alias Description ECC score Gene Family Method Actions
Ala_g19875 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Dcu_g13139 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.04 OrthoFinder output from all 47 species
GSVIVT01016055001 No alias ATP-dependent RNA helicase DEAH12, chloroplastic... 0.04 OrthoFinder output from all 47 species
Nbi_g08847 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species
Ore_g28009 No alias plant-specific E3 ubiquitin ligase *(RSL/RFA) & original... 0.02 OrthoFinder output from all 47 species
Solyc02g069230.3.1 Solyc02g069230 plant-specific E3 ubiquitin ligase (RSL/RFA) 0.02 OrthoFinder output from all 47 species
Tin_g09748 No alias plant-specific E3 ubiquiTin ligase *(RSL/RFA) & original... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046872 metal ion binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003968 RNA-dependent RNA polymerase activity IEP HCCA
BP GO:0006886 intracellular protein transport IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016779 nucleotidyltransferase activity IEP HCCA
CC GO:0030117 membrane coat IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0043565 sequence-specific DNA binding IEP HCCA
MF GO:0051536 iron-sulfur cluster binding IEP HCCA
MF GO:0051540 metal cluster binding IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
InterPro domains Description Start Stop
IPR001841 Znf_RING 416 444
IPR002867 IBR_dom 497 563
IPR002867 IBR_dom 585 632
IPR002156 RNaseH_domain 276 386
IPR000571 Znf_CCCH 696 721
No external refs found!