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  5. Ehy_g20583

Ehy_g20583 (NFD03, HMGB3, NFD3)


Aliases : NFD03, HMGB3, NFD3

Description : DNA bending architectural protein *(HMG-B) & original description: none


Gene families : OG0000118 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000118_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g20583
Cluster HCCA: Cluster_37

Target Alias Description ECC score Gene Family Method Actions
AT1G20693 NFD2, HMG BETA... high mobility group B2 0.02 OrthoFinder output from all 47 species
AT3G51880 NFD1, HMGB1 high mobility group B1 0.02 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020684.49 No alias No description available 0.01 OrthoFinder output from all 47 species
Cpa|evm.model.tig00020902.35 No alias No description available 0.02 OrthoFinder output from all 47 species
Cre11.g480950 ATHMG, HMG, SSRP1, NFD No description available 0.01 OrthoFinder output from all 47 species
LOC_Os01g47600.1 LOC_Os01g47600 High mobility group B protein 14 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
LOC_Os04g47690.1 NFD03, HMGB3,... no hits & (original description: none) 0.03 OrthoFinder output from all 47 species
Lfl_g24838 ATHMG, HMG, SSRP1, NFD not classified & original description: none 0.03 OrthoFinder output from all 47 species
Nbi_g29699 NFD03, HMGB3, NFD3 DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species
Pnu_g00932 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ppi_g61736 No alias DNA bending architectural protein *(HMG-B) & original... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
BP GO:0000096 sulfur amino acid metabolic process IEP HCCA
BP GO:0000272 polysaccharide catabolic process IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0005976 polysaccharide metabolic process IEP HCCA
BP GO:0006413 translational initiation IEP HCCA
BP GO:0006534 cysteine metabolic process IEP HCCA
BP GO:0006790 sulfur compound metabolic process IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
BP GO:0009069 serine family amino acid metabolic process IEP HCCA
BP GO:0009092 homoserine metabolic process IEP HCCA
BP GO:0016052 carbohydrate catabolic process IEP HCCA
MF GO:0016160 amylase activity IEP HCCA
MF GO:0016161 beta-amylase activity IEP HCCA
MF GO:0016835 carbon-oxygen lyase activity IEP HCCA
MF GO:0016836 hydro-lyase activity IEP HCCA
BP GO:0019346 transsulfuration IEP HCCA
MF GO:0019842 vitamin binding IEP HCCA
MF GO:0030170 pyridoxal phosphate binding IEP HCCA
BP GO:0050667 homocysteine metabolic process IEP HCCA
MF GO:0051287 NAD binding IEP HCCA
MF GO:0070279 vitamin B6 binding IEP HCCA
BP GO:1901605 alpha-amino acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR009071 HMG_box_dom 89 158
No external refs found!