Ehy_g18759

Description : RNA helicase Prp43 of Intron-Lariat Spliceosome complex & original description: none

Gene families : OG0000184 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000184_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Ehy_g18759
Cluster	HCCA: Cluster_85

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00025p00202360	evm_27.TU.AmTr_v1...	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
AT3G26560	No alias	ATP-dependent RNA helicase, putative	0.02	OrthoFinder output from all 47 species
Aob_g19314	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g35974	No alias	not classified & original description: none	0.05	OrthoFinder output from all 47 species
Aspi01Gene38222.t1	Aspi01Gene38222	not classified & original description: none	0.04	OrthoFinder output from all 47 species
Cba_g33796	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species
Ceric.01G059500.1	Ceric.01G059500	not classified & original description: pacid=50591809...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000984.27	ESP3, EMB2733	Pre-mRNA-splicing factor ATP-dependent RNA helicase...	0.01	OrthoFinder output from all 47 species
Dac_g30923	No alias	not classified & original description: none	0.04	OrthoFinder output from all 47 species
LOC_Os06g23530.1	LOC_Os06g23530	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.03	OrthoFinder output from all 47 species
Lfl_g05720	EMB3011	RNA helicase *(Prp16) & original description: none	0.03	OrthoFinder output from all 47 species
MA_10434449g0010	No alias	helicase Prp43 of Intron-Lariat Spliceosome complex	0.02	OrthoFinder output from all 47 species
Mp2g13680.1	No alias	Probable pre-mRNA-splicing factor ATP-dependent RNA...	0.02	OrthoFinder output from all 47 species
Mp7g03460.1	EMB3011	RNA helicase (Prp16)	0.02	OrthoFinder output from all 47 species
Msp_g14081	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Nbi_g19475	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.03	OrthoFinder output from all 47 species
Nbi_g21732	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g10443	ESP3, EMB2733	RNA helicase *(Prp2) & original description: none	0.03	OrthoFinder output from all 47 species
Ore_g42980	EMB3011	RNA helicase *(Prp16) & original description: none	0.02	OrthoFinder output from all 47 species
Ore_g42990	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Pir_g17419	No alias	RNA helicase *(Prp22) & original description: none	0.02	OrthoFinder output from all 47 species
Sam_g16290	No alias	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g115390.4.1	ESP3, EMB2733,...	RNA helicase (Prp2)	0.03	OrthoFinder output from all 47 species
Spa_g12231	No alias	RNA helicase Prp43 of Intron-Lariat Spliceosome complex...	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005524	ATP binding	IEA	Interproscan
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0030554	adenyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032559	adenyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0004842	ubiquitin-protein transferase activity	IEP	HCCA
MF	GO:0005216	monoatomic ion channel activity	IEP	HCCA
MF	GO:0015267	channel activity	IEP	HCCA
MF	GO:0015276	ligand-gated monoatomic ion channel activity	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0019787	ubiquitin-like protein transferase activity	IEP	HCCA
MF	GO:0022803	passive transmembrane transporter activity	IEP	HCCA
MF	GO:0022834	ligand-gated channel activity	IEP	HCCA
MF	GO:0022836	gated channel activity	IEP	HCCA
MF	GO:0022839	monoatomic ion gated channel activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007502	Helicase-assoc_dom	460	548
IPR001650	Helicase_C	266	397
IPR011545	DEAD/DEAH_box_helicase_dom	68	220
IPR011709	DEAD-box_helicase_OB_fold	610	685

External Links

No external refs found!

Ehy_g18759

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation