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Description : not classified & original description: none
Gene families : OG0001061 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001061_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00056p00043140 | ATCAF1, CAF1,... | RNA processing.organelle machineries.RNA... | 0.02 | OrthoFinder output from all 47 species | |
| AT2G20020 | ATCAF1, CAF1 | RNA-binding CRS1 / YhbY (CRM) domain-containing protein | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g02604 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g19873 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Ala_g22094 | ATCAF1, CAF1 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g34328 | ATCAF1, CAF1 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Als_g16109 | ATCAF1, CAF1 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g30903 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g63274 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g06914 | CAF2, ATCAF2 | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Cba_g12900 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g72184 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.14G027700.1 | Ceric.14G027700 | not classified & original description: pacid=50634377... | 0.04 | OrthoFinder output from all 47 species | |
| GSVIVT01015331001 | ATCAF1, CAF1 | RNA processing.organelle machineries.RNA... | 0.04 | OrthoFinder output from all 47 species | |
| LOC_Os01g21990.1 | CAF2, ATCAF2,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.03 | OrthoFinder output from all 47 species | |
| MA_54539g0010 | No alias | CRS2-associated factor 2, mitochondrial OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g24662 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.05 | OrthoFinder output from all 47 species | |
| Ore_g08767 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g08475 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g36626 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g03045 | ATCAF1, CAF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ppi_g29789 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g56937 | CAF2, ATCAF2 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g26827 | No alias | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc05g018240.4.1 | ATCAF1, CAF1,... | component CAF of CRS2-CAF plastidial RNA splicing factor... | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g10709 | ATCAF1, CAF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g51985 | CAF2, ATCAF2 | component *(CAF) of CRS2-CAF plastidial RNA splicing... | 0.04 | OrthoFinder output from all 47 species | |
| Tin_g12704 | ATCAF1, CAF1 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| BP | GO:0000381 | regulation of alternative mRNA splicing, via spliceosome | IEP | HCCA |
| MF | GO:0003916 | DNA topoisomerase activity | IEP | HCCA |
| MF | GO:0003918 | DNA topoisomerase type II (double strand cut, ATP-hydrolyzing) activity | IEP | HCCA |
| MF | GO:0004497 | monooxygenase activity | IEP | HCCA |
| MF | GO:0005506 | iron ion binding | IEP | HCCA |
| BP | GO:0006259 | DNA metabolic process | IEP | HCCA |
| BP | GO:0006265 | DNA topological change | IEP | HCCA |
| BP | GO:0006996 | organelle organization | IEP | HCCA |
| MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
| BP | GO:0016043 | cellular component organization | IEP | HCCA |
| MF | GO:0016705 | oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen | IEP | HCCA |
| MF | GO:0016853 | isomerase activity | IEP | HCCA |
| BP | GO:0043484 | regulation of RNA splicing | IEP | HCCA |
| BP | GO:0048024 | regulation of mRNA splicing, via spliceosome | IEP | HCCA |
| BP | GO:0050684 | regulation of mRNA processing | IEP | HCCA |
| BP | GO:0051276 | chromosome organization | IEP | HCCA |
| BP | GO:0071103 | DNA conformation change | IEP | HCCA |
| BP | GO:0071840 | cellular component organization or biogenesis | IEP | HCCA |
| MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
| MF | GO:0140640 | catalytic activity, acting on a nucleic acid | IEP | HCCA |
| BP | GO:1903311 | regulation of mRNA metabolic process | IEP | HCCA |
No InterPro domains available for this sequence
| No external refs found! |