Adi_g102292 (PAP(IV), nPAP)

Aliases : PAP(IV), nPAP

Description : poly(A) RNA polymerase & original description: none

Gene families : OG0000731 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000731_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g102292

Target	Alias	Description	ECC score	Gene Family Method
AT4G32850	PAP(IV), nPAP	nuclear poly(a) polymerase	0.03	OrthoFinder output from all 47 species
Ala_g06963	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.03	OrthoFinder output from all 47 species
Als_g33647	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.02	OrthoFinder output from all 47 species
Dac_g03375	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.02	OrthoFinder output from all 47 species
Dcu_g13917	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.03	OrthoFinder output from all 47 species
Gb_12958	PAPS1	poly(A) RNA polymerase	0.03	OrthoFinder output from all 47 species
LOC_Os02g13400.2	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.02	OrthoFinder output from all 47 species
Lfl_g10052	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
Lfl_g15635	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.04	OrthoFinder output from all 47 species
Solyc08g066200.3.1	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.03	OrthoFinder output from all 47 species
Spa_g22121	PAP(IV), nPAP	poly(A) RNA polymerase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e005199_P002	PAPS1, Zm00001e005199	poly(A) RNA polymerase	0.03	OrthoFinder output from all 47 species
Zm00001e012328_P001	PAPS1, Zm00001e012328	poly(A) RNA polymerase	0.02	OrthoFinder output from all 47 species
Zm00001e030659_P006	PAP(IV), nPAP,...	poly(A) RNA polymerase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
BP	GO:0006139	nucleobase-containing compound metabolic process	None	Extended
BP	GO:0006725	cellular aromatic compound metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016070	RNA metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
BP	GO:0043631	RNA polyadenylation	IEA	Interproscan
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0046483	heterocycle metabolic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
BP	GO:0090304	nucleic acid metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
BP	GO:1901360	organic cyclic compound metabolic process	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000375	RNA splicing, via transesterification reactions	IEP	HCCA
BP	GO:0000377	RNA splicing, via transesterification reactions with bulged adenosine as nucleophile	IEP	HCCA
BP	GO:0000398	mRNA splicing, via spliceosome	IEP	HCCA
MF	GO:0003684	damaged DNA binding	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006289	nucleotide-excision repair	IEP	HCCA
BP	GO:0006396	RNA processing	IEP	HCCA
BP	GO:0006397	mRNA processing	IEP	HCCA
BP	GO:0006508	proteolysis	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006950	response to stress	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0008380	RNA splicing	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0010498	proteasomal protein catabolic process	IEP	HCCA
BP	GO:0016071	mRNA metabolic process	IEP	HCCA
BP	GO:0016579	protein deubiquitination	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016779	nucleotidyltransferase activity	IEP	HCCA
BP	GO:0019538	protein metabolic process	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
BP	GO:0030163	protein catabolic process	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
BP	GO:0043161	proteasome-mediated ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044248	cellular catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0070646	protein modification by small protein removal	IEP	HCCA
BP	GO:0070647	protein modification by small protein conjugation or removal	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
MF	GO:0140096	catalytic activity, acting on a protein	IEP	HCCA
BP	GO:1901564	organonitrogen compound metabolic process	IEP	HCCA
BP	GO:1901565	organonitrogen compound catabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR007012	PolA_pol_cen_dom	95	284
IPR002934	Polymerase_NTP_transf_dom	14	94
IPR007010	PolA_pol_RNA-bd_dom	288	346

External Links

No external refs found!

Adi_g102292 (PAP(IV), nPAP)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation