GSVIVT01004860001


Description : 27.3.39 RNA.regulation of transcription.AtSR Transcription Factor family Encodes a putative CAM binding transcription factor. Loss of function mutations show enhanced resistance to fungal and bacterial pathogens suggesting that CAMTA functions to suppress defense responses. signal responsive 1 (SR1)


Gene families : OG_01_0000629 (Gene family) Phylogenetic Tree(s): OG0000629_tree

Sequence : coding (download), protein (download)


Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR network (cutoff 100): GSVIVT01004860001
Cluster HCCA cluster: Cluster_136

Target Alias Description ECC score Gene Family Method Actions
AT2G22300 CAMTA3, SR1 signal responsive 1 0.04 Gene family
LOC_Os01g69910 Os01g0923600 30.11 signalling.light Calmodulin-binding transcription... 0.04 Gene family
LOC_Os03g09100 Os03g0191000 27.3.39 RNA.regulation of transcription.AtSR... 0.05 Gene family
LOC_Os04g31900 Os04g0388500 30.11 signalling.light Calmodulin-binding transcription... 0.06 Gene family
LOC_Os07g43030 Os07g0623100 17.5.3 hormone... 0.04 Gene family
LOC_Os10g22950 Os10g0375600 27.3.39 RNA.regulation of transcription.AtSR... 0.05 Gene family
Solyc01g105230.3.1 Solyc01g105230.3 27.3.39 RNA.regulation of transcription.AtSR... 0.07 Gene family
Solyc04g056270.3.1 Solyc04g056270.3 27.3.39 RNA.regulation of transcription.AtSR... 0.04 Gene family
Solyc05g015650.3.1 Solyc05g015650.3 30.11 signalling.light Calmodulin-binding transcription... 0.05 Gene family
Zm00001d014286 GRMZM2G341747 27.3.39 RNA.regulation of transcription.AtSR... 0.06 Gene family
Zm00001d022185 GRMZM2G017368 27.3.39 RNA.regulation of transcription.AtSR... 0.03 Gene family
Zm00001d030518 GRMZM2G153594 27.3.39 RNA.regulation of transcription.AtSR... 0.03 Gene family
Zm00001d047209 GRMZM2G431243 27.3.39 RNA.regulation of transcription.AtSR... 0.05 Gene family

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA InterProScan
Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence

InterPro domains Description Start Stop
IPR002909 IPT_dom 664 749
IPR005559 CG-1_dom 224 305
IPR020683 Ankyrin_rpt-contain_dom 869 960
IPR000048 IQ_motif_EF-hand-BS 1093 1112
IPR000048 IQ_motif_EF-hand-BS 1069 1088
No external refs found!