1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g089629

Adi_g089629


Description : not classified & original description: none


Gene families : OG0002093 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002093_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g089629

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00024p00193220 CMT3,... Chromatin organisation.DNA methylation.RNA-independent... 0.06 OrthoFinder output from all 47 species
AMTR_s00048p00181490 CMT2,... Chromatin organisation.DNA methylation.RNA-independent... 0.04 OrthoFinder output from all 47 species
Ala_g07783 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Als_g09491 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Als_g30424 CMT3 DNA chromomethylase *(CMT) & original description: none 0.07 OrthoFinder output from all 47 species
Aop_g10939 CMT3 DNA chromomethylase *(CMT) & original description: none 0.09 OrthoFinder output from all 47 species
Aspi01Gene43679.t1 CMT3, Aspi01Gene43679 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
Azfi_s0003.g007336 CMT2 DNA chromomethylase *(CMT) & original description: CDS=1-1743 0.03 OrthoFinder output from all 47 species
Cba_g10809 CMT3 not classified & original description: none 0.05 OrthoFinder output from all 47 species
Ceric.12G007000.1 CMT3, Ceric.12G007000 DNA chromomethylase *(CMT) & original description:... 0.06 OrthoFinder output from all 47 species
Ceric.34G031800.1 CMT3, Ceric.34G031800 DNA chromomethylase *(CMT) & original description:... 0.04 OrthoFinder output from all 47 species
Cre03.g202150 No alias Putative DNA (cytosine-5)-methyltransferase CMT1... 0.02 OrthoFinder output from all 47 species
Dac_g12073 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Dcu_g46826 CMT3 DNA chromomethylase *(CMT) & original description: none 0.07 OrthoFinder output from all 47 species
Dcu_g50047 CMT2 DNA chromomethylase *(CMT) & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g25407 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
GSVIVT01024446001 CMT2 Chromatin organisation.DNA methylation.RNA-independent... 0.03 OrthoFinder output from all 47 species
GSVIVT01025386001 CMT3 Chromatin organisation.DNA methylation.RNA-independent... 0.07 OrthoFinder output from all 47 species
GSVIVT01033464001 CMT1, DMT4 Chromatin organisation.DNA methylation.RNA-independent... 0.05 OrthoFinder output from all 47 species
Gb_13672 CMT3 DNA chromomethylase (CMT) 0.04 OrthoFinder output from all 47 species
LOC_Os10g01570.1 CMT3, LOC_Os10g01570 DNA chromomethylase (CMT) 0.04 OrthoFinder output from all 47 species
Len_g07756 CMT3 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
Len_g24159 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Len_g28119 CMT2 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Lfl_g18656 CMT2 DNA chromomethylase *(CMT) & original description: none 0.06 OrthoFinder output from all 47 species
MA_173651g0010 CMT3 DNA (cytosine-5)-methyltransferase CMT2 OS=Oryza sativa... 0.04 OrthoFinder output from all 47 species
Mp6g08650.1 CMT3 DNA chromomethylase (CMT) 0.05 OrthoFinder output from all 47 species
Msp_g14579 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Nbi_g39436 CMT3 DNA chromomethylase *(CMT) & original description: none 0.08 OrthoFinder output from all 47 species
Pir_g07202 CMT3 DNA chromomethylase *(CMT) & original description: none 0.03 OrthoFinder output from all 47 species
Ppi_g62076 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Sacu_v1.1_s0222.g026232 CMT3 DNA chromomethylase *(CMT) & original description: CDS=250-2766 0.04 OrthoFinder output from all 47 species
Solyc01g006100.4.1 CMT3, Solyc01g006100 DNA chromomethylase (CMT) 0.06 OrthoFinder output from all 47 species
Solyc08g005400.4.1 CMT2, Solyc08g005400 DNA chromomethylase (CMT) 0.02 OrthoFinder output from all 47 species
Solyc12g100330.2.1 CMT3, Solyc12g100330 DNA chromomethylase (CMT) 0.06 OrthoFinder output from all 47 species
Spa_g08555 CMT3 DNA chromomethylase *(CMT) & original description: none 0.12 OrthoFinder output from all 47 species
Spa_g26095 CMT3 DNA chromomethylase *(CMT) & original description: none 0.05 OrthoFinder output from all 47 species
Spa_g52855 No alias not classified & original description: none 0.06 OrthoFinder output from all 47 species
Tin_g07640 CMT3 DNA chromomethylase *(CMT) & original description: none 0.07 OrthoFinder output from all 47 species
Tin_g10202 CMT3 DNA chromomethylase *(CMT) & original description: none 0.1 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003682 chromatin binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
CC GO:0000786 nucleosome IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0004797 thymidine kinase activity IEP HCCA
CC GO:0005694 chromosome IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
BP GO:0006996 organelle organization IEP HCCA
BP GO:0016043 cellular component organization IEP HCCA
MF GO:0019136 deoxynucleoside kinase activity IEP HCCA
MF GO:0019205 nucleobase-containing compound kinase activity IEP HCCA
MF GO:0019206 nucleoside kinase activity IEP HCCA
CC GO:0032993 protein-DNA complex IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
CC GO:0044815 DNA packaging complex IEP HCCA
BP GO:0051276 chromosome organization IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
BP GO:0071840 cellular component organization or biogenesis IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
InterPro domains Description Start Stop
IPR001025 BAH_dom 11 95
No external refs found!