Adi_g087695

Description : linker histone *(H1) & original description: none

Gene families : OG0000310 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000310_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g087695

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00002p00264270	evm_27.TU.AmTr_v1...	Chromatin organisation.histones.H1 linker histone	0.02	OrthoFinder output from all 47 species
Ala_g23326	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Als_g07230	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g08116	HIS1-3	linker histone *(H1) & original description: none	0.06	OrthoFinder output from all 47 species
Aspi01Gene10645.t1	Aspi01Gene10645	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aspi01Gene25496.t1	HIS1-3, Aspi01Gene25496	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Cba_g16569	No alias	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
MA_11137g0010	No alias	no hits & (original description: none)	0.02	OrthoFinder output from all 47 species
MA_877599g0010	No alias	linker histone (H1)	0.02	OrthoFinder output from all 47 species
Nbi_g04093	HIS1-3	linker histone *(H1) & original description: none	0.03	OrthoFinder output from all 47 species
Ppi_g59703	HIS1-3	linker histone *(H1) & original description: none	0.04	OrthoFinder output from all 47 species
Smo27494	No alias	Chromatin organisation.histones.H1 linker histone	0.03	OrthoFinder output from all 47 species
Spa_g09323	HIS1-3	linker histone *(H1) & original description: none	0.02	OrthoFinder output from all 47 species
Zm00001e007189_P001	HIS1-3, Zm00001e007189	linker histone (H1)	0.04	OrthoFinder output from all 47 species
Zm00001e011857_P001	Zm00001e011857	linker histone (H1)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
CC	GO:0000786	nucleosome	IEA	Interproscan
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003677	DNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
BP	GO:0006325	chromatin organization	None	Extended
BP	GO:0006334	nucleosome assembly	IEA	Interproscan
BP	GO:0006338	chromatin remodeling	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
CC	GO:0032993	protein-DNA complex	None	Extended
BP	GO:0034728	nucleosome organization	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
CC	GO:0044815	DNA packaging complex	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0065004	protein-DNA complex assembly	None	Extended
BP	GO:0071824	protein-DNA complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000159	protein phosphatase type 2A complex	IEP	HCCA
MF	GO:0000166	nucleotide binding	IEP	HCCA
MF	GO:0003824	catalytic activity	IEP	HCCA
MF	GO:0004672	protein kinase activity	IEP	HCCA
MF	GO:0005507	copper ion binding	IEP	HCCA
MF	GO:0005524	ATP binding	IEP	HCCA
CC	GO:0005634	nucleus	IEP	HCCA
BP	GO:0006468	protein phosphorylation	IEP	HCCA
BP	GO:0006793	phosphorus metabolic process	IEP	HCCA
BP	GO:0006796	phosphate-containing compound metabolic process	IEP	HCCA
CC	GO:0008287	protein serine/threonine phosphatase complex	IEP	HCCA
MF	GO:0016301	kinase activity	IEP	HCCA
BP	GO:0016310	phosphorylation	IEP	HCCA
MF	GO:0016740	transferase activity	IEP	HCCA
MF	GO:0016772	transferase activity, transferring phosphorus-containing groups	IEP	HCCA
MF	GO:0016773	phosphotransferase activity, alcohol group as acceptor	IEP	HCCA
MF	GO:0017076	purine nucleotide binding	IEP	HCCA
MF	GO:0019208	phosphatase regulator activity	IEP	HCCA
MF	GO:0019888	protein phosphatase regulator activity	IEP	HCCA
MF	GO:0030234	enzyme regulator activity	IEP	HCCA
MF	GO:0030554	adenyl nucleotide binding	IEP	HCCA
MF	GO:0032553	ribonucleotide binding	IEP	HCCA
MF	GO:0032555	purine ribonucleotide binding	IEP	HCCA
MF	GO:0032559	adenyl ribonucleotide binding	IEP	HCCA
MF	GO:0035639	purine ribonucleoside triphosphate binding	IEP	HCCA
MF	GO:0036094	small molecule binding	IEP	HCCA
BP	GO:0036211	protein modification process	IEP	HCCA
MF	GO:0043167	ion binding	IEP	HCCA
MF	GO:0043168	anion binding	IEP	HCCA
BP	GO:0043412	macromolecule modification	IEP	HCCA
MF	GO:0046914	transition metal ion binding	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
MF	GO:0097367	carbohydrate derivative binding	IEP	HCCA
MF	GO:0098772	molecular function regulator activity	IEP	HCCA
MF	GO:1901265	nucleoside phosphate binding	IEP	HCCA
CC	GO:1903293	phosphatase complex	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR005818	Histone_H1/H5_H15	1	53

External Links

No external refs found!

Adi_g087695

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation