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  5. Adi_g086893

Adi_g086893 (ATMYC2, MYC2,...)


Aliases : ATMYC2, MYC2, RD22BP1, JIN1, ZBF1, JAI1

Description : bHLH-type transcription factor & original description: none


Gene families : OG0000245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g086893

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00021p00226670 evm_27.TU.AmTr_v1... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
Als_g31841 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ehy_g07082 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01013156001 ATMYC2, MYC2,... RNA biosynthesis.transcriptional activation.bHLH... 0.02 OrthoFinder output from all 47 species
LOC_Os07g11020.1 BHLH42, TT8,... Basic helix-loop-helix protein A OS=Pisum sativum... 0.02 OrthoFinder output from all 47 species
LOC_Os10g42430.1 ATMYC2, MYC2,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Pir_g10926 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pnu_g09679 ATMYC2, MYC2,... bHLH-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc06g083980.3.1 Solyc06g083980 transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species
Solyc08g005050.4.1 ATMYC2, MYC2,... transcription factor (bHLH) 0.02 OrthoFinder output from all 47 species
Solyc08g076930.1.1 ATMYC2, MYC2,... transcription factor (bHLH) 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0046983 protein dimerization activity IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0000375 RNA splicing, via transesterification reactions IEP HCCA
BP GO:0000377 RNA splicing, via transesterification reactions with bulged adenosine as nucleophile IEP HCCA
BP GO:0000398 mRNA splicing, via spliceosome IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004518 nuclease activity IEP HCCA
MF GO:0004540 ribonuclease activity IEP HCCA
BP GO:0006397 mRNA processing IEP HCCA
BP GO:0008380 RNA splicing IEP HCCA
MF GO:0010181 FMN binding IEP HCCA
BP GO:0016071 mRNA metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR011598 bHLH_dom 568 614
IPR025610 MYC/MYB_N 78 257
No external refs found!