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Aliases : SYD, CHR3
Description : SMARCA component *(SYD/BRM/MINU) & original description: none
Gene families : OG0000102 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000102_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AT2G13370 | CHR5 | chromatin remodeling 5 | 0.04 | OrthoFinder output from all 47 species | |
| AT2G28290 | SYD, CHR3 | P-loop containing nucleoside triphosphate hydrolases... | 0.05 | OrthoFinder output from all 47 species | |
| AT5G44800 | PKR1, CHR4 | chromatin remodeling 4 | 0.03 | OrthoFinder output from all 47 species | |
| Aev_g04898 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Aev_g13876 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.05 | OrthoFinder output from all 47 species | |
| Ala_g02726 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g11507 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g12634 | PKL, GYM, CHR6,... | not classified & original description: none | 0.06 | OrthoFinder output from all 47 species | |
| Ala_g17670 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Ala_g27421 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g01971 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g03868 | CHR11 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g05142 | PKL, GYM, CHR6,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Als_g06850 | PKR1, CHR4 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Als_g14847 | CHR5 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g16533 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g56902 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Als_g59182 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g18378 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aob_g29249 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Aop_g27471 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Aspi01Gene24030.t1 | CHR5, Aspi01Gene24030 | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Aspi01Gene25758.t1 | SYD, CHR3,... | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.05 | OrthoFinder output from all 47 species | |
| Azfi_s0013.g013433 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0024.g020347 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.03G025400.1 | PKL, GYM, CHR6,... | not classified & original description: pacid=50572032... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.10G020300.1 | CHR5, Ceric.10G020300 | component *(CHR5) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Ceric.1Z205000.1 | PKR1, CHR4,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Ceric.36G015700.1 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Ceric.37G008600.1 | SYD, CHR3,... | SMARCA component *(SYD/BRM/MINU) & original description:... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00000350.9 | PKR2 | CHD3-type chromatin-remodeling factor PICKLE... | 0.02 | OrthoFinder output from all 47 species | |
| Cre12.g508150 | CHR11 | Chromatin organisation.chromatin remodeling... | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g06908 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g03216 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g07767 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Dcu_g38948 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dcu_g42511 | PKL, GYM, CHR6,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Dde_g06082 | CHR17 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | OrthoFinder output from all 47 species | |
| Dde_g09827 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01017820001 | SYD, CHR3 | Chromatin organisation.chromatin remodeling... | 0.06 | OrthoFinder output from all 47 species | |
| GSVIVT01037235001 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.06 | OrthoFinder output from all 47 species | |
| Len_g01407 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| Len_g08675 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Len_g11421 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Len_g29294 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g02374 | ATCHR12 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04300 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g04983 | CHR11 | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g06769 | PKR1, CHR4 | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.02 | OrthoFinder output from all 47 species | |
| Lfl_g16058 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Lfl_g30624 | PKL, GYM, CHR6,... | CHD3-type chromatin remodeling factor *(PKL/PKR) &... | 0.04 | OrthoFinder output from all 47 species | |
| MA_23378g0020 | ATCHR12 | Probable ATP-dependent DNA helicase CHR12 OS=Arabidopsis... | 0.03 | OrthoFinder output from all 47 species | |
| MA_8926002g0010 | SYD, CHR3 | Chromatin structure-remodeling complex protein SYD... | 0.02 | OrthoFinder output from all 47 species | |
| Mp2g26680.1 | PKL, GYM, CHR6,... | CHD3-type chromatin-remodeling factor PICKLE... | 0.04 | OrthoFinder output from all 47 species | |
| Mp5g06580.2 | SYD, CHR3 | chromatin remodeling factor (Snf2) | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g44223 | CHR11 | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Nbi_g02510 | CHR5 | component *(CHR5) of SAGA transcription co-activator... | 0.04 | OrthoFinder output from all 47 species | |
| Ore_g10377 | CHR17 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Ore_g12701 | CHR11 | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g16211 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pir_g52065 | PKL, GYM, CHR6,... | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Pnu_g07046 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Pp3c10_2280V3.1 | PKL, GYM, CHR6,... | chromatin remodeling 4 | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g13843 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g14615 | No alias | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Sam_g16204 | No alias | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g29220 | No alias | component *(CHR5) of SAGA transcription co-activator... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g50500 | No alias | ATPase component *(CHR11/CHR17) of ISWI chromatin... | 0.02 | OrthoFinder output from all 47 species | |
| Smo155996 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.03 | OrthoFinder output from all 47 species | |
| Smo177985 | PKL, GYM, CHR6,... | Chromatin organisation.chromatin remodeling... | 0.02 | OrthoFinder output from all 47 species | |
| Smo440203 | CHR11 | Chromatin organisation.chromatin remodeling... | 0.02 | OrthoFinder output from all 47 species | |
| Smo440815 | CHR5 | RNA biosynthesis.RNA polymerase II-dependent... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc06g065730.3.1 | PKL, GYM, CHR6,... | chromatin remodeling factor (Chd3/Mi-2) | 0.04 | OrthoFinder output from all 47 species | |
| Solyc11g062010.3.1 | SYD, CHR3, Solyc11g062010 | chromatin remodeling factor (Snf2) | 0.06 | OrthoFinder output from all 47 species | |
| Spa_g12616 | PKL, GYM, CHR6,... | not classified & original description: none | 0.04 | OrthoFinder output from all 47 species | |
| Spa_g17788 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Tin_g08468 | SYD, CHR3 | SMARCA component *(SYD/BRM/MINU) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Zm00001e030969_P003 | SYD, CHR3, Zm00001e030969 | chromatin remodeling factor (Snf2) | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0042393 | histone binding | IEA | Interproscan |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0004175 | endopeptidase activity | IEP | HCCA |
| MF | GO:0004222 | metalloendopeptidase activity | IEP | HCCA |
| BP | GO:0006508 | proteolysis | IEP | HCCA |
| BP | GO:0006511 | ubiquitin-dependent protein catabolic process | IEP | HCCA |
| BP | GO:0007155 | cell adhesion | IEP | HCCA |
| MF | GO:0008237 | metallopeptidase activity | IEP | HCCA |
| BP | GO:0009057 | macromolecule catabolic process | IEP | HCCA |
| BP | GO:0019538 | protein metabolic process | IEP | HCCA |
| MF | GO:0019899 | enzyme binding | IEP | HCCA |
| BP | GO:0019941 | modification-dependent protein catabolic process | IEP | HCCA |
| MF | GO:0031625 | ubiquitin protein ligase binding | IEP | HCCA |
| BP | GO:0043632 | modification-dependent macromolecule catabolic process | IEP | HCCA |
| BP | GO:0044248 | cellular catabolic process | IEP | HCCA |
| BP | GO:0044265 | cellular macromolecule catabolic process | IEP | HCCA |
| MF | GO:0044389 | ubiquitin-like protein ligase binding | IEP | HCCA |
| BP | GO:0051603 | proteolysis involved in protein catabolic process | IEP | HCCA |
| No external refs found! |