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  5. Ehy_g15811

Ehy_g15811 (At-SCL30A, SCL30A)


Aliases : At-SCL30A, SCL30A

Description : RNA splicing factor *(SCL28/30/33) & original description: none


Gene families : OG0001193 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001193_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g15811
Cluster HCCA: Cluster_58

Target Alias Description ECC score Gene Family Method Actions
Ala_g10641 At-SCL30A, SCL30A RNA splicing factor *(SCL28/30/33) & original description: none 0.02 OrthoFinder output from all 47 species
GSVIVT01016562001 SCL30, At-SCL30 RNA processing.RNA splicing.spliceosome-associated... 0.02 OrthoFinder output from all 47 species
LOC_Os02g15310.1 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
LOC_Os12g38430.1 SCL30, At-SCL30,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species
Mp4g01880.1 At-SCL30A, SCL30A SCL28/30/33 RNA splicing factor 0.02 OrthoFinder output from all 47 species
Zm00001e038130_P001 At-SCL30A,... SCL28/30/33 RNA splicing factor 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0000166 nucleotide binding IEP HCCA
MF GO:0005515 protein binding IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006457 protein folding IEP HCCA
MF GO:0016462 pyrophosphatase activity IEP HCCA
MF GO:0016817 hydrolase activity, acting on acid anhydrides IEP HCCA
MF GO:0016818 hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides IEP HCCA
MF GO:0016887 ATP hydrolysis activity IEP HCCA
MF GO:0017076 purine nucleotide binding IEP HCCA
MF GO:0017111 ribonucleoside triphosphate phosphatase activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0031072 heat shock protein binding IEP HCCA
MF GO:0032553 ribonucleotide binding IEP HCCA
MF GO:0032555 purine ribonucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
MF GO:0036094 small molecule binding IEP HCCA
MF GO:0043168 anion binding IEP HCCA
MF GO:0044183 protein folding chaperone IEP HCCA
MF GO:0051082 unfolded protein binding IEP HCCA
MF GO:0097367 carbohydrate derivative binding IEP HCCA
MF GO:0140657 ATP-dependent activity IEP HCCA
MF GO:0140662 ATP-dependent protein folding chaperone IEP HCCA
MF GO:1901265 nucleoside phosphate binding IEP HCCA
InterPro domains Description Start Stop
IPR000504 RRM_dom 176 245
No external refs found!