Aliases : ATPRP40A, PRP40A
Description : pre-mRNA-processing protein *(PRP40A/B) & original description: none
Gene families : OG0002189 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0002189_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00010p00227470 | ATPRP40A,... | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
AT1G44910 | ATPRP40A, PRP40A | pre-mRNA-processing protein 40A | 0.03 | OrthoFinder output from all 47 species | |
AT3G19670 | ATPRP40B, PRP40B | pre-mRNA-processing protein 40B | 0.03 | OrthoFinder output from all 47 species | |
Ala_g02608 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ala_g12867 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Als_g23383 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Aob_g02355 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Aop_g14297 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Aspi01Gene56050.t1 | ATPRP40A,... | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ceric.06G057100.1 | ATPRP40A,... | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Ceric.36G014500.1 | ATPRP40A,... | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Cre07.g351000 | ATPRP40A, PRP40A | RNA processing.RNA splicing.U2-type-intron-specific... | 0.03 | OrthoFinder output from all 47 species | |
Dac_g14060 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Dcu_g33711 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.05 | OrthoFinder output from all 47 species | |
Ehy_g02927 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
GSVIVT01009302001 | ATPRP40A, PRP40A | RNA processing.RNA splicing.U2-type-intron-specific... | 0.08 | OrthoFinder output from all 47 species | |
LOC_Os01g34780.1 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g04256 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g08148 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
MA_10433850g0010 | ATPRP40A, PRP40A | pre-mRNA-processing protein (PRP40A/B) | 0.03 | OrthoFinder output from all 47 species | |
Mp2g00410.1 | ATPRP40A, PRP40A | pre-mRNA-processing protein (PRP40A/B) | 0.06 | OrthoFinder output from all 47 species | |
Ore_g17451 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.04 | OrthoFinder output from all 47 species | |
Ore_g40944 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g01375 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sacu_v1.1_s0203.g025648 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Sam_g13746 | No alias | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.07 | OrthoFinder output from all 47 species | |
Solyc07g022760.4.1 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.04 | OrthoFinder output from all 47 species | |
Spa_g09384 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.03 | OrthoFinder output from all 47 species | |
Spa_g10390 | ATPRP40A, PRP40A | pre-mRNA-processing protein *(PRP40A/B) & original... | 0.02 | OrthoFinder output from all 47 species | |
Zm00001e020775_P002 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.03 | OrthoFinder output from all 47 species | |
Zm00001e020778_P001 | ATPRP40A,... | pre-mRNA-processing protein (PRP40A/B) | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0005515 | protein binding | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
MF | GO:0003723 | RNA binding | IEP | HCCA |
MF | GO:0003729 | mRNA binding | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
CC | GO:0005643 | nuclear pore | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
MF | GO:0008094 | ATP-dependent activity, acting on DNA | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
CC | GO:0032991 | protein-containing complex | IEP | HCCA |
CC | GO:0035145 | exon-exon junction complex | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
MF | GO:0140097 | catalytic activity, acting on DNA | IEP | HCCA |
CC | GO:0140513 | nuclear protein-containing complex | IEP | HCCA |
MF | GO:0140658 | ATP-dependent chromatin remodeler activity | IEP | HCCA |
No external refs found! |