Adi_g079654 (RPS18A, PFL, PFL1)

Aliases : RPS18A, PFL, PFL1

Description : component *(uS13) of small ribosomal-subunit (SSU) proteome & original description: none

Gene families : OG0001648 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001648_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g079654

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00078p00178430	RPS18A, PFL,...	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
AT1G22780	RPS18A, PFL, PFL1	Ribosomal protein S13/S18 family	0.06	OrthoFinder output from all 47 species
AT1G34030	No alias	Ribosomal protein S13/S18 family	0.07	OrthoFinder output from all 47 species
AT4G09800	RPS18C	S18 ribosomal protein	0.03	OrthoFinder output from all 47 species
Als_g13803	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Als_g63644	RPS18A, PFL, PFL1	not classified & original description: none	0.02	OrthoFinder output from all 47 species
Aop_g07943	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Azfi_s0157.g053803	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Azfi_s0393.g067809	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Ceric.06G075100.1	RPS18A, PFL,...	component *(uS13) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Ceric.25G059000.1	RPS18A, PFL,...	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Cre06.g272950	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.1	OrthoFinder output from all 47 species
Dac_g30011	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.08	OrthoFinder output from all 47 species
Dcu_g07903	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
GSVIVT01017975001	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.08	OrthoFinder output from all 47 species
GSVIVT01034582001	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.03	OrthoFinder output from all 47 species
LOC_Os03g58050.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.07	OrthoFinder output from all 47 species
LOC_Os07g07709.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.03	OrthoFinder output from all 47 species
Lfl_g16499	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Lfl_g23484	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.02	OrthoFinder output from all 47 species
MA_10429265g0010	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.04	OrthoFinder output from all 47 species
MA_10431843g0010	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.03	OrthoFinder output from all 47 species
Mp1g07420.1	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.07	OrthoFinder output from all 47 species
Mp5g02820.1	RPS18A, PFL, PFL1	component RPS18 of SSU proteome	0.08	OrthoFinder output from all 47 species
Nbi_g05557	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Ore_g06073	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Pp3c16_2090V3.1	RPS18A, PFL,...	Ribosomal protein S13/S18 family	0.05	OrthoFinder output from all 47 species
Pp3c6_21770V3.1	RPS18A, PFL,...	Ribosomal protein S13/S18 family	0.05	OrthoFinder output from all 47 species
Ppi_g24083	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.03	OrthoFinder output from all 47 species
Sam_g11517	No alias	component *(uS13) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Sam_g32254	No alias	component *(uS13) of small ribosomal-subunit (SSU)...	0.07	OrthoFinder output from all 47 species
Sam_g35155	No alias	component *(uS13) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Smo267619	RPS18A, PFL, PFL1	Protein biosynthesis.cytosolic ribosome.small subunit...	0.04	OrthoFinder output from all 47 species
Solyc03g078290.3.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.08	OrthoFinder output from all 47 species
Solyc06g073370.4.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.03	OrthoFinder output from all 47 species
Solyc11g005680.2.1	RPS18A, PFL,...	component RPS18 of SSU proteome	0.04	OrthoFinder output from all 47 species
Spa_g10602	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.06	OrthoFinder output from all 47 species
Spa_g10603	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Spa_g40316	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.05	OrthoFinder output from all 47 species
Tin_g22509	RPS18A, PFL, PFL1	component *(uS13) of small ribosomal-subunit (SSU)...	0.04	OrthoFinder output from all 47 species
Zm00001e005967_P001	RPS18A, PFL,...	component RPS18 of SSU proteome	0.08	OrthoFinder output from all 47 species
Zm00001e011880_P001	RPS18A, PFL,...	component RPS18 of SSU proteome	0.09	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	IEA	Interproscan
MF	GO:0003735	structural constituent of ribosome	IEA	Interproscan
MF	GO:0005198	structural molecule activity	None	Extended
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005840	ribosome	IEA	Interproscan
BP	GO:0006412	translation	IEA	Interproscan
BP	GO:0006518	peptide metabolic process	None	Extended
BP	GO:0006807	nitrogen compound metabolic process	None	Extended
BP	GO:0008150	biological_process	None	Extended
BP	GO:0008152	metabolic process	None	Extended
BP	GO:0009058	biosynthetic process	None	Extended
BP	GO:0009059	macromolecule biosynthetic process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0019538	protein metabolic process	None	Extended
BP	GO:0034641	cellular nitrogen compound metabolic process	None	Extended
BP	GO:0034645	cellular macromolecule biosynthetic process	None	Extended
BP	GO:0043043	peptide biosynthetic process	None	Extended
BP	GO:0043170	macromolecule metabolic process	None	Extended
CC	GO:0043226	organelle	None	Extended
CC	GO:0043228	non-membrane-bounded organelle	None	Extended
CC	GO:0043229	intracellular organelle	None	Extended
CC	GO:0043232	intracellular non-membrane-bounded organelle	None	Extended
BP	GO:0043603	amide metabolic process	None	Extended
BP	GO:0043604	amide biosynthetic process	None	Extended
BP	GO:0044237	cellular metabolic process	None	Extended
BP	GO:0044238	primary metabolic process	None	Extended
BP	GO:0044249	cellular biosynthetic process	None	Extended
BP	GO:0044260	cellular macromolecule metabolic process	None	Extended
BP	GO:0044271	cellular nitrogen compound biosynthetic process	None	Extended
BP	GO:0071704	organic substance metabolic process	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0110165	cellular anatomical entity	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
BP	GO:1901564	organonitrogen compound metabolic process	None	Extended
BP	GO:1901566	organonitrogen compound biosynthetic process	None	Extended
BP	GO:1901576	organic substance biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
CC	GO:0000178	exosome (RNase complex)	IEP	HCCA
MF	GO:0003712	transcription coregulator activity	IEP	HCCA
MF	GO:0003746	translation elongation factor activity	IEP	HCCA
BP	GO:0006355	regulation of DNA-templated transcription	IEP	HCCA
BP	GO:0006357	regulation of transcription by RNA polymerase II	IEP	HCCA
BP	GO:0006417	regulation of translation	IEP	HCCA
BP	GO:0006448	regulation of translational elongation	IEP	HCCA
BP	GO:0006449	regulation of translational termination	IEP	HCCA
BP	GO:0009889	regulation of biosynthetic process	IEP	HCCA
BP	GO:0009891	positive regulation of biosynthetic process	IEP	HCCA
BP	GO:0009893	positive regulation of metabolic process	IEP	HCCA
BP	GO:0010468	regulation of gene expression	IEP	HCCA
BP	GO:0010556	regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010557	positive regulation of macromolecule biosynthetic process	IEP	HCCA
BP	GO:0010604	positive regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0010608	post-transcriptional regulation of gene expression	IEP	HCCA
BP	GO:0010628	positive regulation of gene expression	IEP	HCCA
CC	GO:0016592	mediator complex	IEP	HCCA
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0019222	regulation of metabolic process	IEP	HCCA
BP	GO:0031323	regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031325	positive regulation of cellular metabolic process	IEP	HCCA
BP	GO:0031326	regulation of cellular biosynthetic process	IEP	HCCA
BP	GO:0031328	positive regulation of cellular biosynthetic process	IEP	HCCA
CC	GO:0032991	protein-containing complex	IEP	HCCA
BP	GO:0034248	regulation of amide metabolic process	IEP	HCCA
BP	GO:0034250	positive regulation of amide metabolic process	IEP	HCCA
MF	GO:0042393	histone binding	IEP	HCCA
MF	GO:0043021	ribonucleoprotein complex binding	IEP	HCCA
MF	GO:0043022	ribosome binding	IEP	HCCA
BP	GO:0043243	positive regulation of protein-containing complex disassembly	IEP	HCCA
BP	GO:0043244	regulation of protein-containing complex disassembly	IEP	HCCA
MF	GO:0044877	protein-containing complex binding	IEP	HCCA
BP	GO:0045727	positive regulation of translation	IEP	HCCA
BP	GO:0045901	positive regulation of translational elongation	IEP	HCCA
BP	GO:0045905	positive regulation of translational termination	IEP	HCCA
BP	GO:0048518	positive regulation of biological process	IEP	HCCA
BP	GO:0048522	positive regulation of cellular process	IEP	HCCA
BP	GO:0050789	regulation of biological process	IEP	HCCA
BP	GO:0050794	regulation of cellular process	IEP	HCCA
BP	GO:0051128	regulation of cellular component organization	IEP	HCCA
BP	GO:0051130	positive regulation of cellular component organization	IEP	HCCA
BP	GO:0051171	regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051173	positive regulation of nitrogen compound metabolic process	IEP	HCCA
BP	GO:0051246	regulation of protein metabolic process	IEP	HCCA
BP	GO:0051247	positive regulation of protein metabolic process	IEP	HCCA
BP	GO:0051252	regulation of RNA metabolic process	IEP	HCCA
BP	GO:0060255	regulation of macromolecule metabolic process	IEP	HCCA
BP	GO:0065007	biological regulation	IEP	HCCA
BP	GO:0080090	regulation of primary metabolic process	IEP	HCCA
CC	GO:0140513	nuclear protein-containing complex	IEP	HCCA
BP	GO:1903506	regulation of nucleic acid-templated transcription	IEP	HCCA
CC	GO:1905354	exoribonuclease complex	IEP	HCCA
BP	GO:2000112	regulation of cellular macromolecule biosynthetic process	IEP	HCCA
BP	GO:2001141	regulation of RNA biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001892	Ribosomal_S13	14	142

External Links

No external refs found!

Adi_g079654 (RPS18A, PFL, PFL1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation