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  5. Adi_g078795

Adi_g078795 (NFC04, MSI4, NFC4,...)


Aliases : NFC04, MSI4, NFC4, ACG1, FVE, ATMSI4

Description : flowering time factor *(FVE) & original description: none


Gene families : OG0004797 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004797_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g078795

Target Alias Description ECC score Gene Family Method Actions
AT4G29730 NFC5, MSI5 nucleosome/chromatin assembly factor group C5 0.02 OrthoFinder output from all 47 species
Aev_g42711 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.02 OrthoFinder output from all 47 species
Aop_g03800 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.25G001800.1 NFC04, MSI4,... flowering time factor *(FVE) & original description:... 0.06 OrthoFinder output from all 47 species
Cre06.g268450 NFC04, MSI4,... Chromatin organisation.histone chaperone activities.CAF1... 0.01 OrthoFinder output from all 47 species
GSVIVT01016852001 NFC04, MSI4,... Chromatin organisation.histone chaperone activities.CAF1... 0.03 OrthoFinder output from all 47 species
Gb_32208 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
LOC_Os01g51300.1 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species
MA_359g0010 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.04 OrthoFinder output from all 47 species
Ppi_g13270 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.06 OrthoFinder output from all 47 species
Sacu_v1.1_s0105.g020149 NFC04, MSI4,... flowering time factor *(FVE) & original description: CDS=105-974 0.02 OrthoFinder output from all 47 species
Solyc03g121580.3.1 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.02 OrthoFinder output from all 47 species
Tin_g20539 NFC04, MSI4,... flowering time factor *(FVE) & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e028156_P001 NFC04, MSI4,... component CAF1c/MSI of CAF1 histone chaperone complex 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0003729 mRNA binding IEP HCCA
MF GO:0004843 cysteine-type deubiquitinase activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005685 U1 snRNP IEP HCCA
BP GO:0006376 mRNA splice site selection IEP HCCA
BP GO:0006508 proteolysis IEP HCCA
BP GO:0006511 ubiquitin-dependent protein catabolic process IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
CC GO:0008287 protein serine/threonine phosphatase complex IEP HCCA
BP GO:0009057 macromolecule catabolic process IEP HCCA
MF GO:0009678 pyrophosphate hydrolysis-driven proton transmembrane transporter activity IEP HCCA
BP GO:0009987 cellular process IEP HCCA
MF GO:0015399 primary active transmembrane transporter activity IEP HCCA
BP GO:0016579 protein deubiquitination IEP HCCA
MF GO:0019208 phosphatase regulator activity IEP HCCA
MF GO:0019783 ubiquitin-like protein peptidase activity IEP HCCA
MF GO:0019829 ATPase-coupled monoatomic cation transmembrane transporter activity IEP HCCA
MF GO:0019888 protein phosphatase regulator activity IEP HCCA
MF GO:0019899 enzyme binding IEP HCCA
BP GO:0019941 modification-dependent protein catabolic process IEP HCCA
BP GO:0022618 ribonucleoprotein complex assembly IEP HCCA
MF GO:0022853 active monoatomic ion transmembrane transporter activity IEP HCCA
CC GO:0030289 protein phosphatase 4 complex IEP HCCA
CC GO:0030532 small nuclear ribonucleoprotein complex IEP HCCA
MF GO:0031625 ubiquitin protein ligase binding IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
CC GO:0032991 protein-containing complex IEP HCCA
CC GO:0033177 proton-transporting two-sector ATPase complex, proton-transporting domain IEP HCCA
CC GO:0033179 proton-transporting V-type ATPase, V0 domain IEP HCCA
MF GO:0042625 ATPase-coupled ion transmembrane transporter activity IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
BP GO:0043632 modification-dependent macromolecule catabolic process IEP HCCA
BP GO:0044265 cellular macromolecule catabolic process IEP HCCA
MF GO:0044389 ubiquitin-like protein ligase binding IEP HCCA
MF GO:0044769 ATPase activity, coupled to transmembrane movement of ions, rotational mechanism IEP HCCA
BP GO:0046903 secretion IEP HCCA
MF GO:0046961 proton-transporting ATPase activity, rotational mechanism IEP HCCA
BP GO:0051603 proteolysis involved in protein catabolic process IEP HCCA
BP GO:0070646 protein modification by small protein removal IEP HCCA
BP GO:0070647 protein modification by small protein conjugation or removal IEP HCCA
BP GO:0071826 ribonucleoprotein complex subunit organization IEP HCCA
MF GO:0097159 organic cyclic compound binding IEP HCCA
CC GO:0097525 spliceosomal snRNP complex IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
MF GO:0101005 deubiquitinase activity IEP HCCA
CC GO:0120114 Sm-like protein family complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
MF GO:1901363 heterocyclic compound binding IEP HCCA
BP GO:1902600 proton transmembrane transport IEP HCCA
CC GO:1903293 phosphatase complex IEP HCCA
CC GO:1990904 ribonucleoprotein complex IEP HCCA
InterPro domains Description Start Stop
IPR022052 Histone-bd_RBBP4_N 10 76
IPR001680 WD40_repeat 235 270
IPR001680 WD40_repeat 327 364
IPR001680 WD40_repeat 157 192
No external refs found!