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  5. MA_107877g0010

MA_107877g0010


Description : Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana (sp|q9fix3|pp407_arath : 332.0)


Gene families : OG_01_0000198 (Archaeplastida) Phylogenetic Tree(s): OG_01_0000198_tree ,
OG_02_0000086 (LandPlants) Phylogenetic Tree(s): OG_02_0000086_tree ,
OG_03_0019623 (SeedPlants) Phylogenetic Tree(s): No tree available for this family

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: MA_107877g0010
Cluster HCCA: Cluster_510

Target Alias Description ECC score Gene Family Method Actions
AT2G06000 No alias Pentatricopeptide repeat (PPR) superfamily protein 0.03 Archaeplastida
AT3G13150 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.03 Archaeplastida
GSVIVT01011280001 No alias Pentatricopeptide repeat-containing protein At5g46100... 0.03 Archaeplastida
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.07 Archaeplastida
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 Archaeplastida
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 Archaeplastida
MA_71816g0020 No alias Pentatricopeptide repeat-containing protein At3g14580,... 0.02 Archaeplastida
Mp1g21650.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 Archaeplastida
Solyc05g012250.3.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.04 Archaeplastida
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 Archaeplastida
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 Archaeplastida
AT3G13160 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
Gb_05553 No alias group-II intron mitochondrial splicing factor (MISF74) 0.02 LandPlants
Gb_35219 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.02 LandPlants
LOC_Os01g57630.2 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.05 LandPlants
LOC_Os01g63400.1 No alias Pentatricopeptide repeat-containing protein At3g09060... 0.04 LandPlants
LOC_Os02g26890.1 No alias Pentatricopeptide repeat-containing protein At5g18475... 0.03 LandPlants
LOC_Os05g11700.1 No alias Putative pentatricopeptide repeat-containing protein... 0.02 LandPlants
Mp1g21650.1 No alias Pentatricopeptide repeat-containing protein At3g06920... 0.02 LandPlants
Pp3c2_27580V3.1 No alias Tetratricopeptide repeat (TPR)-like superfamily protein 0.02 LandPlants
Solyc05g012250.3.1 No alias Pentatricopeptide repeat-containing protein At1g80150,... 0.04 LandPlants
Zm00001e011589_P001 No alias no hits & (original description: none) 0.02 LandPlants
Zm00001e028938_P001 No alias Pentatricopeptide repeat-containing protein At1g55890,... 0.02 LandPlants
Zm00001e034625_P001 No alias Putative pentatricopeptide repeat-containing protein... 0.04 LandPlants

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source

No Predicted GO terms available for this sequence
InterPro domains Description Start Stop
IPR002885 Pentatricopeptide_repeat 539 567
IPR002885 Pentatricopeptide_repeat 125 147
IPR002885 Pentatricopeptide_repeat 429 479
IPR002885 Pentatricopeptide_repeat 325 373
IPR002885 Pentatricopeptide_repeat 152 200
IPR002885 Pentatricopeptide_repeat 254 303
IPR002885 Pentatricopeptide_repeat 570 619
IPR002885 Pentatricopeptide_repeat 642 687
IPR002885 Pentatricopeptide_repeat 216 246
IPR002885 Pentatricopeptide_repeat 390 423
No external refs found!