Aliases : RDO4, HUB1
Description : E3 ubiquitin ligase *(HUB) & original description: none
Gene families : OG0001584 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001584_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AT1G55250 | HUB2 | histone mono-ubiquitination 2 | 0.07 | OrthoFinder output from all 47 species | |
AT2G44950 | RDO4, HUB1 | histone mono-ubiquitination 1 | 0.02 | OrthoFinder output from all 47 species | |
Adi_g104160 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ala_g02632 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Ala_g13983 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.04 | OrthoFinder output from all 47 species | |
Als_g01150 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Aop_g09718 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Cba_g32079 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ceric.14G031800.1 | RDO4, HUB1,... | E3 ubiquitin ligase *(HUB) & original description:... | 0.07 | OrthoFinder output from all 47 species | |
Ceric.21G031900.1 | HUB2, Ceric.21G031900 | E3 ubiquitin ligase *(HUB) & original description:... | 0.02 | OrthoFinder output from all 47 species | |
Cpa|evm.model.tig00000169.18 | HUB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
Cre14.g625802 | No alias | Protein degradation.peptide tagging.Ubiquitin... | 0.01 | OrthoFinder output from all 47 species | |
Dac_g03836 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Dcu_g04023 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
Dcu_g04109 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.09 | OrthoFinder output from all 47 species | |
Ehy_g05021 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
GSVIVT01018223001 | RDO4, HUB1 | Protein degradation.peptide tagging.Ubiquitin... | 0.05 | OrthoFinder output from all 47 species | |
GSVIVT01025404001 | HUB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.04 | OrthoFinder output from all 47 species | |
Lfl_g11288 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Lfl_g26973 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
MA_10430809g0020 | HUB2 | RING-HC-class E3 ligase | 0.07 | OrthoFinder output from all 47 species | |
MA_10433221g0010 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
MA_10433679g0010 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.05 | OrthoFinder output from all 47 species | |
MA_592562g0010 | HUB2 | RING-HC-class E3 ligase | 0.03 | OrthoFinder output from all 47 species | |
Mp6g03540.1 | RDO4, HUB1 | RING-HC-class E3 ligase | 0.01 | OrthoFinder output from all 47 species | |
Msp_g06195 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ore_g35898 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Pir_g10428 | RDO4, HUB1 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g01320 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Ppi_g07599 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g12359 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Sam_g35279 | No alias | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Smo175555 | HUB2 | Protein degradation.peptide tagging.Ubiquitin... | 0.03 | OrthoFinder output from all 47 species | |
Solyc01g006040.3.1 | HUB2, Solyc01g006040 | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
Solyc11g013370.3.1 | RDO4, HUB1,... | RING-HC-class E3 ligase | 0.02 | OrthoFinder output from all 47 species | |
Spa_g08099 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.06 | OrthoFinder output from all 47 species | |
Spa_g12693 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.02 | OrthoFinder output from all 47 species | |
Spa_g55706 | HUB2 | E3 ubiquitin ligase *(HUB) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Tin_g15227 | RDO4, HUB1 | E3 ubiquiTin ligase *(HUB) & original description: none | 0.07 | OrthoFinder output from all 47 species | |
Zm00001e013143_P005 | RDO4, HUB1,... | RING-HC-class E3 ligase | 0.06 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
No GO annotation available for this sequence |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003968 | RNA-dependent RNA polymerase activity | IEP | HCCA |
MF | GO:0004843 | cysteine-type deubiquitinase activity | IEP | HCCA |
MF | GO:0005515 | protein binding | IEP | HCCA |
BP | GO:0006397 | mRNA processing | IEP | HCCA |
MF | GO:0008234 | cysteine-type peptidase activity | IEP | HCCA |
BP | GO:0016071 | mRNA metabolic process | IEP | HCCA |
BP | GO:0016579 | protein deubiquitination | IEP | HCCA |
MF | GO:0019783 | ubiquitin-like protein peptidase activity | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0031124 | mRNA 3'-end processing | IEP | HCCA |
MF | GO:0034062 | 5'-3' RNA polymerase activity | IEP | HCCA |
BP | GO:0070646 | protein modification by small protein removal | IEP | HCCA |
BP | GO:0070647 | protein modification by small protein conjugation or removal | IEP | HCCA |
MF | GO:0097747 | RNA polymerase activity | IEP | HCCA |
MF | GO:0101005 | deubiquitinase activity | IEP | HCCA |
No InterPro domains available for this sequence
No external refs found! |