Adi_g058439 (EDF4, RAV1)

Aliases : EDF4, RAV1

Description : AP2-RAV-type transcription factor *(EDF) & original description: none

Gene families : OG0000941 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000941_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g058439

Target	Alias	Description	ECC score	Gene Family Method
AMTR_s00007p00238950	evm_27.TU.AmTr_v1...	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
AMTR_s00018p00040300	NGA1,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
AT1G25560	TEM1, EDF1	AP2/B3 transcription factor family protein	0.02	OrthoFinder output from all 47 species
AT1G68840	EDF2, AtRAV2,...	related to ABI3/VP1 2	0.03	OrthoFinder output from all 47 species
AT3G11580	No alias	AP2/B3-like transcriptional factor family protein	0.02	OrthoFinder output from all 47 species
Aev_g44854	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Ala_g04649	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g11266	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Azfi_s0102.g044523	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Ceric.22G022700.1	TEM1, EDF1,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Dac_g22480	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Dac_g39956	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.07	OrthoFinder output from all 47 species
Dde_g25414	TEM1, EDF1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Ehy_g00006	No alias	not classified & original description: none	0.03	OrthoFinder output from all 47 species
Ehy_g16987	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
GSVIVT01011947001	EDF2, AtRAV2,...	RNA biosynthesis.transcriptional activation.B3...	0.02	OrthoFinder output from all 47 species
GSVIVT01036447001	EDF4, RAV1	RNA biosynthesis.transcriptional activation.AP2/ERF...	0.03	OrthoFinder output from all 47 species
Gb_18035	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	OrthoFinder output from all 47 species
LOC_Os01g04750.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
LOC_Os01g49830.1	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
LOC_Os04g49230.1	LOC_Os04g49230	transcription factor (RAV/NGATHA)	0.04	OrthoFinder output from all 47 species
LOC_Os06g01860.1	LOC_Os06g01860	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
LOC_Os08g06120.1	NGA1, LOC_Os08g06120	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
LOC_Os10g39190.1	NGA1, LOC_Os10g39190	transcription factor (RAV/NGATHA)	0.04	OrthoFinder output from all 47 species
LOC_Os11g05740.1	LOC_Os11g05740	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Len_g14264	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Len_g36994	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.05	OrthoFinder output from all 47 species
Lfl_g21540	NGA1	RAV/NGATHA-type transcription factor & original description: none	0.03	OrthoFinder output from all 47 species
MA_116574g0010	EDF3	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
MA_18923g0010	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
Mp2g22250.1	EDF4, RAV1	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
Nbi_g11598	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.04	OrthoFinder output from all 47 species
Pir_g14845	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.02	OrthoFinder output from all 47 species
Ppi_g32810	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Sacu_v1.1_s0036.g011516	EDF2, AtRAV2,...	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Solyc05g009790.1.1	EDF4, RAV1,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.05	OrthoFinder output from all 47 species
Tin_g08816	EDF4, RAV1	AP2-RAV-type transcription factor *(EDF) & original...	0.03	OrthoFinder output from all 47 species
Zm00001e000156_P001	NGA3, Zm00001e000156	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Zm00001e007152_P001	NGA1, Zm00001e007152	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species
Zm00001e016956_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Zm00001e020092_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.02	OrthoFinder output from all 47 species
Zm00001e032325_P001	EDF2, AtRAV2,...	transcription factor (RAV/NGATHA). transcription factor (AP2-RAV)	0.04	OrthoFinder output from all 47 species
Zm00001e039393_P002	Zm00001e039393	transcription factor (RAV/NGATHA)	0.03	OrthoFinder output from all 47 species
Zm00001e040214_P001	NGA3, Zm00001e040214	transcription factor (RAV/NGATHA)	0.02	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003700	DNA-binding transcription factor activity	IEA	Interproscan
BP	GO:0006355	regulation of DNA-templated transcription	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009889	regulation of biosynthetic process	None	Extended
BP	GO:0010468	regulation of gene expression	None	Extended
BP	GO:0010556	regulation of macromolecule biosynthetic process	None	Extended
BP	GO:0019219	regulation of nucleobase-containing compound metabolic process	None	Extended
BP	GO:0019222	regulation of metabolic process	None	Extended
BP	GO:0031323	regulation of cellular metabolic process	None	Extended
BP	GO:0031326	regulation of cellular biosynthetic process	None	Extended
BP	GO:0050789	regulation of biological process	None	Extended
BP	GO:0050794	regulation of cellular process	None	Extended
BP	GO:0051171	regulation of nitrogen compound metabolic process	None	Extended
BP	GO:0051252	regulation of RNA metabolic process	None	Extended
BP	GO:0060255	regulation of macromolecule metabolic process	None	Extended
BP	GO:0065007	biological regulation	None	Extended
BP	GO:0080090	regulation of primary metabolic process	None	Extended
MF	GO:0140110	transcription regulator activity	None	Extended
BP	GO:1903506	regulation of nucleic acid-templated transcription	None	Extended
BP	GO:2001141	regulation of RNA biosynthetic process	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000271	polysaccharide biosynthetic process	IEP	HCCA
MF	GO:0003677	DNA binding	IEP	HCCA
MF	GO:0004180	carboxypeptidase activity	IEP	HCCA
MF	GO:0004185	serine-type carboxypeptidase activity	IEP	HCCA
BP	GO:0005976	polysaccharide metabolic process	IEP	HCCA
BP	GO:0006073	cellular glucan metabolic process	IEP	HCCA
MF	GO:0008238	exopeptidase activity	IEP	HCCA
BP	GO:0009250	glucan biosynthetic process	IEP	HCCA
MF	GO:0016759	cellulose synthase activity	IEP	HCCA
MF	GO:0016760	cellulose synthase (UDP-forming) activity	IEP	HCCA
BP	GO:0030243	cellulose metabolic process	IEP	HCCA
BP	GO:0030244	cellulose biosynthetic process	IEP	HCCA
BP	GO:0033692	cellular polysaccharide biosynthetic process	IEP	HCCA
BP	GO:0034637	cellular carbohydrate biosynthetic process	IEP	HCCA
MF	GO:0035251	UDP-glucosyltransferase activity	IEP	HCCA
BP	GO:0044042	glucan metabolic process	IEP	HCCA
BP	GO:0044264	cellular polysaccharide metabolic process	IEP	HCCA
MF	GO:0046527	glucosyltransferase activity	IEP	HCCA
BP	GO:0051273	beta-glucan metabolic process	IEP	HCCA
BP	GO:0051274	beta-glucan biosynthetic process	IEP	HCCA
MF	GO:0070008	serine-type exopeptidase activity	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR003340	B3_DNA-bd	178	236
IPR001471	AP2/ERF_dom	4	52

External Links

No external refs found!

Adi_g058439 (EDF4, RAV1)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation