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  5. Adi_g056854

Adi_g056854


Description : not classified & original description: none


Gene families : OG0001514 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001514_tree

Sequence : coding (download), protein (download)


Attention: This gene has low abundance.


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g056854

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00017p00179100 evm_27.TU.AmTr_v1... Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Adi_g088467 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Als_g08575 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aob_g13520 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Cba_g00927 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.16G075200.1 RPD1, Ceric.16G075200 not classified & original description: pacid=50589258... 0.04 OrthoFinder output from all 47 species
Ceric.24G018700.1 Ceric.24G018700 not classified & original description: pacid=50629155... 0.04 OrthoFinder output from all 47 species
Ceric.39G028700.1 Ceric.39G028700 not classified & original description: pacid=50582453... 0.04 OrthoFinder output from all 47 species
Dcu_g01416 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Dde_g02184 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Gb_02172 No alias Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
LOC_Os01g18880.2 LOC_Os01g18880 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.02 OrthoFinder output from all 47 species
LOC_Os03g57270.1 LOC_Os03g57270 WTF9 mitochondrial RNA splicing factor 0.02 OrthoFinder output from all 47 species
Len_g07210 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Msp_g05381 RPD1 not classified & original description: none 0.04 OrthoFinder output from all 47 species
Ppi_g05109 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species
Solyc11g019970.3.1 Solyc11g019970 no description available(sp|q9zuz6|wtf9_arath : 243.0) 0.03 OrthoFinder output from all 47 species
Tin_g19450 No alias not classified & original description: none 0.04 OrthoFinder output from all 47 species
Tin_g31693 RPD1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e006573_P002 Zm00001e006573 Protein WHATS THIS FACTOR 1 homolog OS=Arabidopsis... 0.04 OrthoFinder output from all 47 species
Zm00001e014695_P001 Zm00001e014695 no description available(sp|q9zuz6|wtf9_arath : 128.0) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
BP GO:0001522 pseudouridine synthesis IEP HCCA
MF GO:0004809 tRNA (guanine-N2-)-methyltransferase activity IEP HCCA
MF GO:0005515 protein binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006396 RNA processing IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0008168 methyltransferase activity IEP HCCA
MF GO:0008170 N-methyltransferase activity IEP HCCA
MF GO:0008173 RNA methyltransferase activity IEP HCCA
MF GO:0008175 tRNA methyltransferase activity IEP HCCA
MF GO:0008757 S-adenosylmethionine-dependent methyltransferase activity IEP HCCA
BP GO:0009451 RNA modification IEP HCCA
MF GO:0009982 pseudouridine synthase activity IEP HCCA
BP GO:0016070 RNA metabolic process IEP HCCA
MF GO:0016423 tRNA (guanine) methyltransferase activity IEP HCCA
MF GO:0016741 transferase activity, transferring one-carbon groups IEP HCCA
MF GO:0016853 isomerase activity IEP HCCA
MF GO:0016866 intramolecular transferase activity IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
MF GO:0140098 catalytic activity, acting on RNA IEP HCCA
MF GO:0140101 catalytic activity, acting on a tRNA IEP HCCA
MF GO:0140640 catalytic activity, acting on a nucleic acid IEP HCCA
BP GO:1901360 organic cyclic compound metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR021099 PORR_domain 54 381
No external refs found!