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Aliases : VCS
Description : scaffold component *(VCS) of mRNA decapping complex & original description: none
Gene families : OG0001030 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001030_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
| Target | Alias | Description | ECC score | Gene Family Method | Actions |
|---|---|---|---|---|---|
| AMTR_s00061p00131900 | VCS,... | RNA processing.RNA decay.deadenylation-dependent... | 0.06 | OrthoFinder output from all 47 species | |
| AT3G13300 | VCS | Transducin/WD40 repeat-like superfamily protein | 0.08 | OrthoFinder output from all 47 species | |
| Adi_g069030 | VCR | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Adi_g071245 | VCS | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Aev_g04893 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Ala_g11471 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Als_g15285 | VCS | not classified & original description: none | 0.03 | OrthoFinder output from all 47 species | |
| Als_g63425 | VCR | scaffold component *(VCS) of mRNA decapping complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Aop_g08777 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Aspi01Gene58199.t1 | VCR, Aspi01Gene58199 | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Azfi_s0049.g030776 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Azfi_s0189.g056859 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Cba_g04739 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Cba_g27245 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.05 | OrthoFinder output from all 47 species | |
| Ceric.06G068900.1 | VCS, Ceric.06G068900 | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Cpa|evm.model.tig00001038.27 | VCS | Varicose-related protein OS=Arabidopsis thaliana | 0.01 | OrthoFinder output from all 47 species | |
| Cre12.g553100 | VCR | Varicose-related protein OS=Arabidopsis thaliana | 0.02 | OrthoFinder output from all 47 species | |
| Dac_g14564 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Dac_g32809 | VCR | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Dcu_g05835 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Dcu_g11716 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Dde_g00985 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Dde_g10360 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| GSVIVT01006976001 | VCS | RNA processing.RNA decay.deadenylation-dependent... | 0.02 | OrthoFinder output from all 47 species | |
| GSVIVT01014783001 | VCS | RNA processing.RNA decay.deadenylation-dependent... | 0.08 | OrthoFinder output from all 47 species | |
| Gb_04906 | VCS | scaffold component VCS of mRNA decapping complex | 0.03 | OrthoFinder output from all 47 species | |
| LOC_Os02g49090.1 | VCS, LOC_Os02g49090 | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species | |
| LOC_Os06g19660.1 | VCS, LOC_Os06g19660 | scaffold component VCS of mRNA decapping complex | 0.06 | OrthoFinder output from all 47 species | |
| Len_g08328 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
| MA_10427487g0020 | VCS | Varicose-related protein OS=Arabidopsis thaliana... | 0.02 | OrthoFinder output from all 47 species | |
| MA_10431534g0010 | VCR | Varicose-related protein OS=Arabidopsis thaliana... | 0.03 | OrthoFinder output from all 47 species | |
| MA_10431534g0020 | VCS | Enhancer of mRNA-decapping protein 4 OS=Arabidopsis... | 0.05 | OrthoFinder output from all 47 species | |
| MA_10431534g0030 | VCS | scaffold component VCS of mRNA decapping complex | 0.06 | OrthoFinder output from all 47 species | |
| Mp3g11710.1 | VCS | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species | |
| Msp_g14526 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Msp_g26178 | VCR | scaffold component *(VCS) of mRNA decapping complex &... | 0.07 | OrthoFinder output from all 47 species | |
| Nbi_g01496 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Nbi_g03858 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Nbi_g04449 | VCR | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Ore_g09332 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.06 | OrthoFinder output from all 47 species | |
| Ore_g36602 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g02589 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Pir_g25441 | VCS | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Ppi_g03283 | VCS | scaffold component *(VCS) of mRNA decaPping complex &... | 0.04 | OrthoFinder output from all 47 species | |
| Ppi_g10110 | VCS | scaffold component *(VCS) of mRNA decaPping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Sam_g16345 | No alias | scaffold component *(VCS) of mRNA decapping complex &... | 0.02 | OrthoFinder output from all 47 species | |
| Solyc07g065950.4.1 | VCS, Solyc07g065950 | scaffold component VCS of mRNA decapping complex | 0.03 | OrthoFinder output from all 47 species | |
| Solyc10g005920.4.1 | VCS, Solyc10g005920 | scaffold component VCS of mRNA decapping complex | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g07074 | VCR | scaffold component *(VCS) of mRNA decapping complex &... | 0.03 | OrthoFinder output from all 47 species | |
| Spa_g37076 | VCR | not classified & original description: none | 0.02 | OrthoFinder output from all 47 species | |
| Zm00001e015689_P001 | VCS, Zm00001e015689 | scaffold component VCS of mRNA decapping complex | 0.05 | OrthoFinder output from all 47 species | |
| Zm00001e023399_P003 | VCS, Zm00001e023399 | scaffold component VCS of mRNA decapping complex | 0.02 | OrthoFinder output from all 47 species |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
No GO annotation available for this sequence |
| Type | GO Term | Name | Evidence | Source |
|---|---|---|---|---|
| MF | GO:0003674 | molecular_function | IEP | HCCA |
| MF | GO:0003676 | nucleic acid binding | IEP | HCCA |
| MF | GO:0003677 | DNA binding | IEP | HCCA |
| MF | GO:0003723 | RNA binding | IEP | HCCA |
| MF | GO:0004386 | helicase activity | IEP | HCCA |
| MF | GO:0005488 | binding | IEP | HCCA |
| BP | GO:0006139 | nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0006355 | regulation of DNA-templated transcription | IEP | HCCA |
| BP | GO:0006396 | RNA processing | IEP | HCCA |
| BP | GO:0006725 | cellular aromatic compound metabolic process | IEP | HCCA |
| BP | GO:0009889 | regulation of biosynthetic process | IEP | HCCA |
| BP | GO:0010468 | regulation of gene expression | IEP | HCCA |
| BP | GO:0010556 | regulation of macromolecule biosynthetic process | IEP | HCCA |
| BP | GO:0016070 | RNA metabolic process | IEP | HCCA |
| BP | GO:0019219 | regulation of nucleobase-containing compound metabolic process | IEP | HCCA |
| BP | GO:0019222 | regulation of metabolic process | IEP | HCCA |
| BP | GO:0031323 | regulation of cellular metabolic process | IEP | HCCA |
| BP | GO:0031326 | regulation of cellular biosynthetic process | IEP | HCCA |
| MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
| BP | GO:0046483 | heterocycle metabolic process | IEP | HCCA |
| BP | GO:0050794 | regulation of cellular process | IEP | HCCA |
| BP | GO:0051171 | regulation of nitrogen compound metabolic process | IEP | HCCA |
| BP | GO:0051252 | regulation of RNA metabolic process | IEP | HCCA |
| BP | GO:0060255 | regulation of macromolecule metabolic process | IEP | HCCA |
| BP | GO:0080090 | regulation of primary metabolic process | IEP | HCCA |
| BP | GO:0090304 | nucleic acid metabolic process | IEP | HCCA |
| MF | GO:0097159 | organic cyclic compound binding | IEP | HCCA |
| BP | GO:1901360 | organic cyclic compound metabolic process | IEP | HCCA |
| MF | GO:1901363 | heterocyclic compound binding | IEP | HCCA |
| BP | GO:1903506 | regulation of nucleic acid-templated transcription | IEP | HCCA |
| BP | GO:2001141 | regulation of RNA biosynthetic process | IEP | HCCA |
| InterPro domains | Description | Start | Stop |
|---|---|---|---|
| IPR032401 | EDC4_WD40 | 219 | 532 |
| No external refs found! |