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  5. Ehy_g13220

Ehy_g13220 (SPL12)


Aliases : SPL12

Description : SBP-type transcription factor & original description: none


Gene families : OG0001309 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001309_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g13220
Cluster HCCA: Cluster_2

Target Alias Description ECC score Gene Family Method Actions
AT1G76580 No alias Squamosa promoter-binding protein-like (SBP domain)... 0.03 OrthoFinder output from all 47 species
AT3G60030 SPL12 squamosa promoter-binding protein-like 12 0.04 OrthoFinder output from all 47 species
Adi_g099813 No alias not classified & original description: none 0.03 OrthoFinder output from all 47 species
Aop_g08355 No alias SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Aspi01Gene39329.t1 SPL1, Aspi01Gene39329 SBP-type transcription factor & original description: none 0.05 OrthoFinder output from all 47 species
Aspi01Gene51465.t1 SPL1, Aspi01Gene51465 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Ceric.10G052200.1 SPL12, Ceric.10G052200 SBP-type transcription factor & original description:... 0.03 OrthoFinder output from all 47 species
Ehy_g07092 SPL12 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
GSVIVT01028208001 SPL1 RNA biosynthesis.transcriptional activation.SBP... 0.02 OrthoFinder output from all 47 species
Gb_00228 SPL1 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
Gb_37539 SPL1R2, ATSPL14,... transcription factor (SBP) 0.02 OrthoFinder output from all 47 species
LOC_Os08g40260.1 LOC_Os08g40260 transcription factor (SBP) 0.03 OrthoFinder output from all 47 species
MA_10434066g0020 No alias Squamosa promoter-binding-like protein 15 OS=Oryza... 0.02 OrthoFinder output from all 47 species
Ore_g29634 SPL1 SBP-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Pir_g36989 SPL1R2, ATSPL14,... SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Sam_g39394 No alias SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Spa_g26324 SPL1 SBP-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Zm00001e003571_P002 Zm00001e003571 transcription factor (SBP) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0005515 protein binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003677 DNA binding IEP HCCA
MF GO:0003700 DNA-binding transcription factor activity IEP HCCA
MF GO:0003743 translation initiation factor activity IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
MF GO:0008135 translation factor activity, RNA binding IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
MF GO:0043167 ion binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
MF GO:0045182 translation regulator activity IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
MF GO:0090079 translation regulator activity, nucleic acid binding IEP HCCA
MF GO:0140110 transcription regulator activity IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR004333 SBP_dom 82 155
IPR002110 Ankyrin_rpt 751 848
No external refs found!