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  5. Ehy_g12887

Ehy_g12887 (HVT1, ATVT-1)


Aliases : HVT1, ATVT-1

Description : not classified & original description: none


Gene families : OG0005875 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0005875_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g12887
Cluster HCCA: Cluster_25

Target Alias Description ECC score Gene Family Method Actions
Adi_g089369 HVT1, ATVT-1 not classified & original description: none 0.02 OrthoFinder output from all 47 species
Ceric.16G053600.1 HVT1, ATVT-1,... not classified & original description: pacid=50590253... 0.03 OrthoFinder output from all 47 species
GSVIVT01020822001 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
MA_10434659g0010 HVT1, ATVT-1 DExH-box ATP-dependent RNA helicase DExH6 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Pir_g44296 HVT1, ATVT-1 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0018.g007644 HVT1, ATVT-1 not classified & original description: CDS=76-3780 0.03 OrthoFinder output from all 47 species
Sam_g16176 No alias not classified & original description: none 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0004386 helicase activity IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003676 nucleic acid binding IEP HCCA
MF GO:0003723 RNA binding IEP HCCA
MF GO:0004559 alpha-mannosidase activity IEP HCCA
BP GO:0005996 monosaccharide metabolic process IEP HCCA
BP GO:0006013 mannose metabolic process IEP HCCA
MF GO:0015923 mannosidase activity IEP HCCA
BP GO:0019318 hexose metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR001374 R3H_dom 53 109
IPR007502 Helicase-assoc_dom 774 865
IPR011709 DEAD-box_helicase_OB_fold 934 1026
IPR001650 Helicase_C 581 709
No external refs found!