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  5. Adi_g050304

Adi_g050304 (NOP56)


Aliases : NOP56

Description : scaffold component *(Nop56) of snoRNP rRNA methylation complex & original description: none


Gene families : OG0004657 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004657_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g050304

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00005p00226680 NOP56,... RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
AT1G56110 NOP56 homolog of nucleolar protein NOP56 0.03 OrthoFinder output from all 47 species
AT3G12860 No alias NOP56-like pre RNA processing ribonucleoprotein 0.02 OrthoFinder output from all 47 species
Aspi01Gene21353.t2 Aspi01Gene21353 not classified & original description: none 0.03 OrthoFinder output from all 47 species
Azfi_s0061.g034932 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cba_g57048 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Cpa|evm.model.tig00001073.20 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
Cre12.g525200 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.02 OrthoFinder output from all 47 species
GSVIVT01008506001 NOP56 RNA processing.RNA modification.rRNA/tRNA... 0.04 OrthoFinder output from all 47 species
LOC_Os03g22880.1 NOP56, LOC_Os03g22880 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.02 OrthoFinder output from all 47 species
MA_9961528g0010 NOP56 Probable nucleolar protein 5-1 OS=Arabidopsis thaliana... 0.02 OrthoFinder output from all 47 species
Mp2g23840.1 NOP56 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
Ore_g37588 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0075.g017374 NOP56 scaffold component *(Nop56) of snoRNP rRNA methylation... 0.04 OrthoFinder output from all 47 species
Sam_g10672 No alias scaffold component *(Nop56) of snoRNP rRNA methylation... 0.02 OrthoFinder output from all 47 species
Zm00001e001676_P001 NOP56, Zm00001e001676 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species
Zm00001e038196_P002 NOP56, Zm00001e038196 snoRNP scaffold component Nop56 of snoRNP rRNA... 0.03 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source

No GO annotation available for this sequence
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Type GO Term Name Evidence Source
CC GO:0000145 exocyst IEP HCCA
MF GO:0003674 molecular_function IEP HCCA
MF GO:0003824 catalytic activity IEP HCCA
MF GO:0003899 DNA-directed 5'-3' RNA polymerase activity IEP HCCA
MF GO:0004134 4-alpha-glucanotransferase activity IEP HCCA
MF GO:0004175 endopeptidase activity IEP HCCA
MF GO:0004252 serine-type endopeptidase activity IEP HCCA
MF GO:0005484 SNAP receptor activity IEP HCCA
CC GO:0005737 cytoplasm IEP HCCA
BP GO:0006351 DNA-templated transcription IEP HCCA
BP GO:0006887 exocytosis IEP HCCA
BP GO:0006890 retrograde vesicle-mediated transport, Golgi to endoplasmic reticulum IEP HCCA
BP GO:0016192 vesicle-mediated transport IEP HCCA
MF GO:0016740 transferase activity IEP HCCA
MF GO:0016746 acyltransferase activity IEP HCCA
MF GO:0030674 protein-macromolecule adaptor activity IEP HCCA
BP GO:0032940 secretion by cell IEP HCCA
MF GO:0034062 5'-3' RNA polymerase activity IEP HCCA
MF GO:0035299 inositol pentakisphosphate 2-kinase activity IEP HCCA
BP GO:0046903 secretion IEP HCCA
BP GO:0048193 Golgi vesicle transport IEP HCCA
MF GO:0060090 molecular adaptor activity IEP HCCA
BP GO:0097659 nucleic acid-templated transcription IEP HCCA
MF GO:0097747 RNA polymerase activity IEP HCCA
CC GO:0099023 vesicle tethering complex IEP HCCA
BP GO:0140352 export from cell IEP HCCA
InterPro domains Description Start Stop
IPR012974 NOP58/56_N 8 72
IPR002687 Nop_dom 181 413
No external refs found!