Description : RNA pseudouridine synthase *(PUS5) & original description: none
Gene families : OG0004230 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0004230_tree
Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.
Target | Alias | Description | ECC score | Gene Family Method | Actions |
---|---|---|---|---|---|
AMTR_s00034p00221180 | evm_27.TU.AmTr_v1... | RNA processing.RNA... | 0.02 | OrthoFinder output from all 47 species | |
Lfl_g02841 | No alias | RNA pseudouridine synthase *(PUS5) & original description: none | 0.03 | OrthoFinder output from all 47 species | |
Msp_g06749 | No alias | RNA pseudouridine synthase *(PUS5) & original description: none | 0.02 | OrthoFinder output from all 47 species |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
BP | GO:0001522 | pseudouridine synthesis | IEA | Interproscan |
MF | GO:0003723 | RNA binding | IEA | Interproscan |
BP | GO:0009451 | RNA modification | IEA | Interproscan |
MF | GO:0009982 | pseudouridine synthase activity | IEA | Interproscan |
Type | GO Term | Name | Evidence | Source |
---|---|---|---|---|
MF | GO:0003677 | DNA binding | IEP | HCCA |
MF | GO:0003697 | single-stranded DNA binding | IEP | HCCA |
MF | GO:0004518 | nuclease activity | IEP | HCCA |
BP | GO:0006396 | RNA processing | IEP | HCCA |
BP | GO:0006950 | response to stress | IEP | HCCA |
BP | GO:0006974 | cellular response to DNA damage stimulus | IEP | HCCA |
BP | GO:0007034 | vacuolar transport | IEP | HCCA |
BP | GO:0016073 | snRNA metabolic process | IEP | HCCA |
BP | GO:0016180 | snRNA processing | IEP | HCCA |
BP | GO:0018142 | protein-DNA covalent cross-linking | IEP | HCCA |
BP | GO:0018143 | nucleic acid-protein covalent cross-linking | IEP | HCCA |
BP | GO:0031123 | RNA 3'-end processing | IEP | HCCA |
BP | GO:0033554 | cellular response to stress | IEP | HCCA |
BP | GO:0034470 | ncRNA processing | IEP | HCCA |
BP | GO:0034472 | snRNA 3'-end processing | IEP | HCCA |
BP | GO:0034477 | U6 snRNA 3'-end processing | IEP | HCCA |
BP | GO:0034660 | ncRNA metabolic process | IEP | HCCA |
MF | GO:0043565 | sequence-specific DNA binding | IEP | HCCA |
BP | GO:0046907 | intracellular transport | IEP | HCCA |
BP | GO:0050896 | response to stimulus | IEP | HCCA |
BP | GO:0051641 | cellular localization | IEP | HCCA |
BP | GO:0051649 | establishment of localization in cell | IEP | HCCA |
BP | GO:0051716 | cellular response to stimulus | IEP | HCCA |
InterPro domains | Description | Start | Stop |
---|---|---|---|
IPR006145 | PsdUridine_synth_RsuA/RluA | 107 | 285 |
No external refs found! |