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  5. Ehy_g12162

Ehy_g12162 (BUM1, SHL, STM, WAM, WAM1, BUM)


Aliases : BUM1, SHL, STM, WAM, WAM1, BUM

Description : KNOX-type transcription factor & original description: none


Gene families : OG0000252 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000252_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Ehy_g12162

Target Alias Description ECC score Gene Family Method Actions
Aev_g21619 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Als_g13096 BUM1, SHL, STM,... BEL-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Azfi_s0006.g009595 BUM1, SHL, STM,... KNOX-type transcription factor & original description: CDS=1-1050 0.03 OrthoFinder output from all 47 species
Cba_g29252 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Cba_g32460 BP, BP1, KNAT1 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Dcu_g36820 KNAT3 KNOX-type transcription factor & original description: none 0.04 OrthoFinder output from all 47 species
Gb_00573 BUM1, SHL, STM,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Gb_10887 BP, BP1, KNAT1 transcription factor (KNOX) 0.03 OrthoFinder output from all 47 species
Ore_g19225 KNAT3 KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Ore_g31221 KNAT4 KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0250.g026749 KNAT3 not classified & original description: CDS=1-780 0.04 OrthoFinder output from all 47 species
Sam_g36645 No alias KNOX-type transcription factor & original description: none 0.02 OrthoFinder output from all 47 species
Solyc05g005090.4.1 KNAT6, KNAT6L,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Spa_g56194 BUM1, SHL, STM,... KNOX-type transcription factor & original description: none 0.03 OrthoFinder output from all 47 species
Zm00001e000173_P003 KNAT7, IXR11,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species
Zm00001e005545_P001 BP, BP1, KNAT1,... transcription factor (KNOX) 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003677 DNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0004420 hydroxymethylglutaryl-CoA reductase (NADPH) activity IEP HCCA
MF GO:0005215 transporter activity IEP HCCA
MF GO:0015095 magnesium ion transmembrane transporter activity IEP HCCA
BP GO:0015693 magnesium ion transport IEP HCCA
BP GO:0015936 coenzyme A metabolic process IEP HCCA
CC GO:0016020 membrane IEP HCCA
MF GO:0016614 oxidoreductase activity, acting on CH-OH group of donors IEP HCCA
MF GO:0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor IEP HCCA
MF GO:0022857 transmembrane transporter activity IEP HCCA
BP GO:0030001 metal ion transport IEP HCCA
BP GO:0033865 nucleoside bisphosphate metabolic process IEP HCCA
BP GO:0033875 ribonucleoside bisphosphate metabolic process IEP HCCA
BP GO:0034032 purine nucleoside bisphosphate metabolic process IEP HCCA
MF GO:0042626 ATPase-coupled transmembrane transporter activity IEP HCCA
MF GO:0046873 metal ion transmembrane transporter activity IEP HCCA
MF GO:0140359 ABC-type transporter activity IEP HCCA
InterPro domains Description Start Stop
IPR005541 KNOX2 171 215
IPR005540 KNOX1 120 157
IPR008422 Homeobox_KN_domain 303 342
IPR005539 ELK_dom 264 284
No external refs found!