Adi_g043401

Description : pre-mRNA-processing protein *(LUC7) & original description: none

Gene families : OG0003288 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003288_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g043401

Target	Alias	Description	ECC score	Gene Family Method
Adi_g019080	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Als_g08504	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Aob_g07158	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Cre14.g621300	No alias	No description available	0.01	OrthoFinder output from all 47 species
Dac_g40184	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
LOC_Os07g27300.2	LOC_Os07g27300	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Lfl_g01936	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Mp2g06220.1	No alias	pre-mRNA-processing protein (LUC7)	0.01	OrthoFinder output from all 47 species
Mp8g04110.1	No alias	pre-mRNA-processing protein (LUC7)	0.02	OrthoFinder output from all 47 species
Nbi_g04227	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species
Pir_g32313	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.02	OrthoFinder output from all 47 species
Solyc03g093160.3.1	Solyc03g093160	pre-mRNA-processing protein (LUC7)	0.03	OrthoFinder output from all 47 species
Spa_g09140	No alias	pre-mRNA-processing protein *(LUC7) & original description: none	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003676	nucleic acid binding	None	Extended
MF	GO:0003723	RNA binding	None	Extended
MF	GO:0003729	mRNA binding	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
CC	GO:0005575	cellular_component	None	Extended
CC	GO:0005685	U1 snRNP	IEA	Interproscan
BP	GO:0006376	mRNA splice site selection	IEA	Interproscan
BP	GO:0008150	biological_process	None	Extended
BP	GO:0009987	cellular process	None	Extended
BP	GO:0016043	cellular component organization	None	Extended
BP	GO:0022607	cellular component assembly	None	Extended
BP	GO:0022618	ribonucleoprotein complex assembly	None	Extended
CC	GO:0030532	small nuclear ribonucleoprotein complex	None	Extended
CC	GO:0032991	protein-containing complex	None	Extended
BP	GO:0043933	protein-containing complex organization	None	Extended
BP	GO:0065003	protein-containing complex assembly	None	Extended
BP	GO:0071826	ribonucleoprotein complex subunit organization	None	Extended
BP	GO:0071840	cellular component organization or biogenesis	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
CC	GO:0097525	spliceosomal snRNP complex	None	Extended
CC	GO:0120114	Sm-like protein family complex	None	Extended
CC	GO:0140513	nuclear protein-containing complex	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended
CC	GO:1990904	ribonucleoprotein complex	None	Extended

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Type	GO Term	Name	Evidence	Source
BP	GO:0000160	phosphorelay signal transduction system	IEP	HCCA
BP	GO:0000387	spliceosomal snRNP assembly	IEP	HCCA
MF	GO:0004721	phosphoprotein phosphatase activity	IEP	HCCA
BP	GO:0006139	nucleobase-containing compound metabolic process	IEP	HCCA
BP	GO:0006259	DNA metabolic process	IEP	HCCA
BP	GO:0006281	DNA repair	IEP	HCCA
BP	GO:0006351	DNA-templated transcription	IEP	HCCA
BP	GO:0006725	cellular aromatic compound metabolic process	IEP	HCCA
BP	GO:0006974	cellular response to DNA damage stimulus	IEP	HCCA
MF	GO:0008138	protein tyrosine/serine/threonine phosphatase activity	IEP	HCCA
BP	GO:0016311	dephosphorylation	IEP	HCCA
MF	GO:0016791	phosphatase activity	IEP	HCCA
BP	GO:0033554	cellular response to stress	IEP	HCCA
MF	GO:0035299	inositol pentakisphosphate 2-kinase activity	IEP	HCCA
BP	GO:0035556	intracellular signal transduction	IEP	HCCA
MF	GO:0042578	phosphoric ester hydrolase activity	IEP	HCCA
BP	GO:0046483	heterocycle metabolic process	IEP	HCCA
BP	GO:0051716	cellular response to stimulus	IEP	HCCA
BP	GO:0090304	nucleic acid metabolic process	IEP	HCCA
BP	GO:0097659	nucleic acid-templated transcription	IEP	HCCA
BP	GO:1901360	organic cyclic compound metabolic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR004882	Luc7-rel	3	249

External Links

No external refs found!

Adi_g043401

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation