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  5. Adi_g043204

Adi_g043204


Description : component *(uS4) of small ribosomal-subunit (SSU) proteome & original description: none


Gene families : OG0001396 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001396_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g043204

Target Alias Description ECC score Gene Family Method Actions
AT5G15200 No alias Ribosomal protein S4 0.08 OrthoFinder output from all 47 species
Adi_g066051 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Ala_g15543 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Aob_g00657 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Aop_g06152 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Azfi_s0076.g037857 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Azfi_s0400.g068238 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Cba_g73681 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ceric.04G104600.1 Ceric.04G104600 component *(uS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Ceric.20G045700.1 Ceric.20G045700 component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Cre08.g359750 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.1 OrthoFinder output from all 47 species
Dac_g13577 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.09 OrthoFinder output from all 47 species
Dcu_g13407 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Dde_g15335 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ehy_g05268 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
GSVIVT01008028001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
GSVIVT01011384001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.09 OrthoFinder output from all 47 species
GSVIVT01020020001 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.04 OrthoFinder output from all 47 species
Gb_41315 No alias component RPS9 of SSU proteome 0.05 OrthoFinder output from all 47 species
LOC_Os03g05980.1 LOC_Os03g05980 component RPS9 of SSU proteome 0.09 OrthoFinder output from all 47 species
LOC_Os11g38959.1 LOC_Os11g38959 component RPS9 of SSU proteome 0.07 OrthoFinder output from all 47 species
Len_g18169 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
MA_10429805g0030 No alias component RPS9 of SSU proteome 0.02 OrthoFinder output from all 47 species
MA_10431745g0020 No alias component RPS9 of SSU proteome 0.06 OrthoFinder output from all 47 species
Mp3g00520.1 No alias component RPS9 of SSU proteome 0.08 OrthoFinder output from all 47 species
Mp6g10930.1 No alias component RPS9 of SSU proteome 0.07 OrthoFinder output from all 47 species
Nbi_g11040 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Ore_g33669 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g07949 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.03 OrthoFinder output from all 47 species
Pir_g48916 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Pp3c12_9190V3.1 Pp3c12_9190 Ribosomal protein S4 0.03 OrthoFinder output from all 47 species
Pp3c13_19780V3.1 Pp3c13_19780 Ribosomal protein S4 0.05 OrthoFinder output from all 47 species
Pp3c3_23720V3.1 Pp3c3_23720 Ribosomal protein S4 0.07 OrthoFinder output from all 47 species
Pp3c4_15290V3.1 Pp3c4_15290 Ribosomal protein S4 0.03 OrthoFinder output from all 47 species
Sacu_v1.1_s0081.g018027 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Sam_g13332 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.02 OrthoFinder output from all 47 species
Sam_g24238 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Smo157263 No alias 40S ribosomal protein S9-2 OS=Arabidopsis thaliana 0.03 OrthoFinder output from all 47 species
Smo74302 No alias 40S ribosomal protein S9-1 OS=Arabidopsis thaliana 0.05 OrthoFinder output from all 47 species
Solyc01g010540.3.1 Solyc01g010540 component RPS9 of SSU proteome 0.06 OrthoFinder output from all 47 species
Solyc01g010580.3.1 Solyc01g010580 component RPS9 of SSU proteome 0.03 OrthoFinder output from all 47 species
Solyc04g005680.4.1 Solyc04g005680 component RPS9 of SSU proteome 0.1 OrthoFinder output from all 47 species
Solyc05g007250.3.1 Solyc05g007250 component RPS9 of SSU proteome 0.08 OrthoFinder output from all 47 species
Spa_g05705 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Spa_g05706 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.04 OrthoFinder output from all 47 species
Spa_g11414 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Spa_g19070 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Tin_g09675 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.07 OrthoFinder output from all 47 species
Tin_g13815 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.06 OrthoFinder output from all 47 species
Tin_g20253 No alias component *(uS4) of small ribosomal-subunit (SSU)... 0.05 OrthoFinder output from all 47 species
Zm00001e010819_P002 Zm00001e010819 component RPS9 of SSU proteome 0.09 OrthoFinder output from all 47 species
Zm00001e018345_P001 Zm00001e018345 component RPS9 of SSU proteome 0.05 OrthoFinder output from all 47 species
Zm00001e037961_P002 Zm00001e037961 component RPS9 of SSU proteome 0.07 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
MF GO:0003712 transcription coregulator activity IEP HCCA
MF GO:0003735 structural constituent of ribosome IEP HCCA
MF GO:0005198 structural molecule activity IEP HCCA
CC GO:0005575 cellular_component IEP HCCA
CC GO:0005840 ribosome IEP HCCA
BP GO:0006355 regulation of DNA-templated transcription IEP HCCA
BP GO:0006357 regulation of transcription by RNA polymerase II IEP HCCA
BP GO:0006412 translation IEP HCCA
BP GO:0006518 peptide metabolic process IEP HCCA
BP GO:0009058 biosynthetic process IEP HCCA
BP GO:0009059 macromolecule biosynthetic process IEP HCCA
BP GO:0009889 regulation of biosynthetic process IEP HCCA
BP GO:0010468 regulation of gene expression IEP HCCA
BP GO:0010556 regulation of macromolecule biosynthetic process IEP HCCA
CC GO:0016592 mediator complex IEP HCCA
BP GO:0019219 regulation of nucleobase-containing compound metabolic process IEP HCCA
BP GO:0019222 regulation of metabolic process IEP HCCA
BP GO:0019538 protein metabolic process IEP HCCA
BP GO:0031323 regulation of cellular metabolic process IEP HCCA
BP GO:0031326 regulation of cellular biosynthetic process IEP HCCA
BP GO:0034641 cellular nitrogen compound metabolic process IEP HCCA
BP GO:0034645 cellular macromolecule biosynthetic process IEP HCCA
MF GO:0042393 histone binding IEP HCCA
BP GO:0043043 peptide biosynthetic process IEP HCCA
CC GO:0043226 organelle IEP HCCA
CC GO:0043228 non-membrane-bounded organelle IEP HCCA
CC GO:0043229 intracellular organelle IEP HCCA
CC GO:0043232 intracellular non-membrane-bounded organelle IEP HCCA
BP GO:0043603 amide metabolic process IEP HCCA
BP GO:0043604 amide biosynthetic process IEP HCCA
BP GO:0044249 cellular biosynthetic process IEP HCCA
BP GO:0044260 cellular macromolecule metabolic process IEP HCCA
BP GO:0044271 cellular nitrogen compound biosynthetic process IEP HCCA
BP GO:0050789 regulation of biological process IEP HCCA
BP GO:0050794 regulation of cellular process IEP HCCA
BP GO:0051171 regulation of nitrogen compound metabolic process IEP HCCA
BP GO:0051252 regulation of RNA metabolic process IEP HCCA
BP GO:0060255 regulation of macromolecule metabolic process IEP HCCA
BP GO:0065007 biological regulation IEP HCCA
BP GO:0080090 regulation of primary metabolic process IEP HCCA
CC GO:0140513 nuclear protein-containing complex IEP HCCA
BP GO:1901566 organonitrogen compound biosynthetic process IEP HCCA
BP GO:1901576 organic substance biosynthetic process IEP HCCA
BP GO:1903506 regulation of nucleic acid-templated transcription IEP HCCA
BP GO:2001141 regulation of RNA biosynthetic process IEP HCCA
InterPro domains Description Start Stop
IPR001912 Ribosomal_S4/S9_N 8 108
IPR002942 S4_RNA-bd 109 152
No external refs found!