Adi_g021268 (AtRABG3d, RABG3d)

Aliases : AtRABG3d, RABG3d

Description : G-class RAB GTPase & original description: none

Gene families : OG0000865 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0000865_tree

Sequence : coding (download), protein (download)

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.

Type	Description	Actions
Neighborhood	HRR: Adi_g021268

Target	Alias	Description	ECC score	Gene Family Method
AT4G09720	ATRABG3A, RABG3A	RAB GTPase homolog G3A	0.01	OrthoFinder output from all 47 species
Ceric.20G031900.1	ATRAB7B, RAB7B,...	G-class RAB GTPase & original description:...	0.03	OrthoFinder output from all 47 species
Cpa\|evm.model.tig00000754.29	ATRABG3C, ATRAB7D, RABG3c	Vesicle trafficking.regulation of membrane tethering and...	0.01	OrthoFinder output from all 47 species
LOC_Os05g44050.1	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Lfl_g25393	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Mp8g13820.1	AtRABG3d, RABG3d	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Pnu_g18574	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Solyc01g109520.3.1	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Solyc03g120750.3.1	AtRABG3d,...	G-class RAB GTPase	0.02	OrthoFinder output from all 47 species
Spa_g11565	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.02	OrthoFinder output from all 47 species
Spa_g53072	AtRABG3d, RABG3d	G-class RAB GTPase & original description: none	0.03	OrthoFinder output from all 47 species
Zm00001e032146_P002	ATRAB7B, RAB7B,...	G-class RAB GTPase	0.03	OrthoFinder output from all 47 species

Type	GO Term	Name	Evidence	Source
MF	GO:0000166	nucleotide binding	None	Extended
MF	GO:0003674	molecular_function	None	Extended
MF	GO:0003824	catalytic activity	None	Extended
MF	GO:0003924	GTPase activity	IEA	Interproscan
MF	GO:0005488	binding	None	Extended
MF	GO:0005525	GTP binding	IEA	Interproscan
MF	GO:0016462	pyrophosphatase activity	None	Extended
MF	GO:0016787	hydrolase activity	None	Extended
MF	GO:0016817	hydrolase activity, acting on acid anhydrides	None	Extended
MF	GO:0016818	hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides	None	Extended
MF	GO:0017076	purine nucleotide binding	None	Extended
MF	GO:0017111	ribonucleoside triphosphate phosphatase activity	None	Extended
MF	GO:0019001	guanyl nucleotide binding	None	Extended
MF	GO:0032553	ribonucleotide binding	None	Extended
MF	GO:0032555	purine ribonucleotide binding	None	Extended
MF	GO:0032561	guanyl ribonucleotide binding	None	Extended
MF	GO:0035639	purine ribonucleoside triphosphate binding	None	Extended
MF	GO:0036094	small molecule binding	None	Extended
MF	GO:0043167	ion binding	None	Extended
MF	GO:0043168	anion binding	None	Extended
MF	GO:0097159	organic cyclic compound binding	None	Extended
MF	GO:0097367	carbohydrate derivative binding	None	Extended
MF	GO:1901265	nucleoside phosphate binding	None	Extended
MF	GO:1901363	heterocyclic compound binding	None	Extended

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Type	GO Term	Name	Evidence	Source
MF	GO:0003743	translation initiation factor activity	IEP	HCCA
MF	GO:0004843	cysteine-type deubiquitinase activity	IEP	HCCA
CC	GO:0005759	mitochondrial matrix	IEP	HCCA
BP	GO:0006325	chromatin organization	IEP	HCCA
BP	GO:0006334	nucleosome assembly	IEP	HCCA
BP	GO:0006338	chromatin remodeling	IEP	HCCA
BP	GO:0006413	translational initiation	IEP	HCCA
BP	GO:0006511	ubiquitin-dependent protein catabolic process	IEP	HCCA
BP	GO:0006694	steroid biosynthetic process	IEP	HCCA
MF	GO:0008135	translation factor activity, RNA binding	IEP	HCCA
BP	GO:0008202	steroid metabolic process	IEP	HCCA
MF	GO:0008234	cysteine-type peptidase activity	IEP	HCCA
BP	GO:0009057	macromolecule catabolic process	IEP	HCCA
BP	GO:0016125	sterol metabolic process	IEP	HCCA
BP	GO:0016126	sterol biosynthetic process	IEP	HCCA
MF	GO:0016627	oxidoreductase activity, acting on the CH-CH group of donors	IEP	HCCA
MF	GO:0016628	oxidoreductase activity, acting on the CH-CH group of donors, NAD or NADP as acceptor	IEP	HCCA
MF	GO:0019783	ubiquitin-like protein peptidase activity	IEP	HCCA
BP	GO:0019941	modification-dependent protein catabolic process	IEP	HCCA
CC	GO:0031082	BLOC complex	IEP	HCCA
CC	GO:0031083	BLOC-1 complex	IEP	HCCA
CC	GO:0031974	membrane-enclosed lumen	IEP	HCCA
BP	GO:0034728	nucleosome organization	IEP	HCCA
CC	GO:0043233	organelle lumen	IEP	HCCA
BP	GO:0043632	modification-dependent macromolecule catabolic process	IEP	HCCA
BP	GO:0044265	cellular macromolecule catabolic process	IEP	HCCA
BP	GO:0045048	protein insertion into ER membrane	IEP	HCCA
MF	GO:0045182	translation regulator activity	IEP	HCCA
BP	GO:0051205	protein insertion into membrane	IEP	HCCA
BP	GO:0051603	proteolysis involved in protein catabolic process	IEP	HCCA
BP	GO:0051668	localization within membrane	IEP	HCCA
BP	GO:0065004	protein-DNA complex assembly	IEP	HCCA
CC	GO:0070013	intracellular organelle lumen	IEP	HCCA
BP	GO:0071816	tail-anchored membrane protein insertion into ER membrane	IEP	HCCA
BP	GO:0071824	protein-DNA complex subunit organization	IEP	HCCA
BP	GO:0072657	protein localization to membrane	IEP	HCCA
MF	GO:0090079	translation regulator activity, nucleic acid binding	IEP	HCCA
BP	GO:0090150	establishment of protein localization to membrane	IEP	HCCA
MF	GO:0101005	deubiquitinase activity	IEP	HCCA
CC	GO:0140535	intracellular protein-containing complex	IEP	HCCA
BP	GO:1901615	organic hydroxy compound metabolic process	IEP	HCCA
BP	GO:1901617	organic hydroxy compound biosynthetic process	IEP	HCCA

InterPro domains	Description	Start	Stop
IPR001806	Small_GTPase	68	235

External Links

No external refs found!

Adi_g021268 (AtRABG3d, RABG3d)

Expression Profile

Co-expression Networks

Expression Context Conservation (ECC)

Functional Annotation