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Adi_g020661


Description : STAR-type post-transcriptionally regulatory factor & original description: none


Gene families : OG0001245 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0001245_tree

Sequence : coding (download), protein (download)


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Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g020661

Target Alias Description ECC score Gene Family Method Actions
AMTR_s00077p00149420 evm_27.TU.AmTr_v1... KH domain-containing protein At3g08620 OS=Arabidopsis thaliana 0.02 OrthoFinder output from all 47 species
Cba_g12930 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Dac_g02693 No alias STAR-type post-transcriptionally regulatory factor &... 0.03 OrthoFinder output from all 47 species
LOC_Os05g34670.1 LOC_Os05g34670 KH domain-containing protein At1g09660/At1g09670... 0.02 OrthoFinder output from all 47 species
Lfl_g05926 No alias STAR-type post-transcriptionally regulatory factor &... 0.04 OrthoFinder output from all 47 species
Pnu_g17075 No alias STAR-type post-transcriptionally regulatory factor &... 0.02 OrthoFinder output from all 47 species
Sacu_v1.1_s0028.g009829 No alias STAR-type post-transcriptionally regulatory factor &... 0.03 OrthoFinder output from all 47 species
Solyc07g066070.3.1 Solyc07g066070 KH domain-containing protein At5g56140 OS=Arabidopsis... 0.03 OrthoFinder output from all 47 species
Zm00001e009383_P001 Zm00001e009383 KH domain-containing protein SPIN1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species
Zm00001e019459_P001 Zm00001e019459 KH domain-containing protein SPIN1 OS=Oryza sativa... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
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Type GO Term Name Evidence Source
CC GO:0005634 nucleus IEP HCCA
BP GO:0006325 chromatin organization IEP HCCA
BP GO:0006334 nucleosome assembly IEP HCCA
BP GO:0006338 chromatin remodeling IEP HCCA
MF GO:0008270 zinc ion binding IEP HCCA
BP GO:0022607 cellular component assembly IEP HCCA
BP GO:0034728 nucleosome organization IEP HCCA
MF GO:0042393 histone binding IEP HCCA
MF GO:0043169 cation binding IEP HCCA
BP GO:0043933 protein-containing complex organization IEP HCCA
MF GO:0046872 metal ion binding IEP HCCA
MF GO:0046914 transition metal ion binding IEP HCCA
BP GO:0065003 protein-containing complex assembly IEP HCCA
BP GO:0065004 protein-DNA complex assembly IEP HCCA
BP GO:0071824 protein-DNA complex subunit organization IEP HCCA
InterPro domains Description Start Stop
IPR004088 KH_dom_type_1 153 204
IPR032377 STAR_dimer 42 76
No external refs found!