1. Home
  2. Species
  3. Actinostachys digitata
  4. Sequence
  5. Adi_g019654

Adi_g019654


Description : component *(UPF2) of RNA quality control Exon Junction complex & original description: none


Gene families : OG0003692 (OrthoFinder output from all 47 species) Phylogenetic Tree(s): OG0003692_tree

Sequence : coding (download), protein (download)


Download

Note:Only the main profile, including all conditions, is shown. Additional statistics and tissue specific profiles are available here.


Type Description Actions
Neighborhood HRR: Adi_g019654

Target Alias Description ECC score Gene Family Method Actions
Gb_41555 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Len_g19045 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species
Mp4g13780.1 No alias component UPF2 of RNA quality control Exon Junction complex 0.02 OrthoFinder output from all 47 species
Sam_g36558 No alias component *(UPF2) of RNA quality control Exon Junction... 0.02 OrthoFinder output from all 47 species

Type GO Term Name Evidence Source
MF GO:0003723 RNA binding IEA Interproscan
MF GO:0005515 protein binding IEA Interproscan
Toggle parental
Type GO Term Name Evidence Source
MF GO:0003684 damaged DNA binding IEP HCCA
MF GO:0004386 helicase activity IEP HCCA
MF GO:0005524 ATP binding IEP HCCA
BP GO:0006139 nucleobase-containing compound metabolic process IEP HCCA
BP GO:0006281 DNA repair IEP HCCA
BP GO:0006399 tRNA metabolic process IEP HCCA
BP GO:0006725 cellular aromatic compound metabolic process IEP HCCA
BP GO:0006974 cellular response to DNA damage stimulus IEP HCCA
BP GO:0008033 tRNA processing IEP HCCA
MF GO:0015299 obsolete solute:proton antiporter activity IEP HCCA
MF GO:0030554 adenyl nucleotide binding IEP HCCA
MF GO:0032559 adenyl ribonucleotide binding IEP HCCA
BP GO:0033554 cellular response to stress IEP HCCA
BP GO:0034470 ncRNA processing IEP HCCA
BP GO:0034660 ncRNA metabolic process IEP HCCA
MF GO:0035639 purine ribonucleoside triphosphate binding IEP HCCA
BP GO:0046483 heterocycle metabolic process IEP HCCA
BP GO:0051716 cellular response to stimulus IEP HCCA
BP GO:0090304 nucleic acid metabolic process IEP HCCA
InterPro domains Description Start Stop
IPR003890 MIF4G-like_typ-3 477 658
IPR003890 MIF4G-like_typ-3 679 873
IPR007193 Upf2/Nmd2_C 1001 1133
No external refs found!